Os03g0210500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os03g0210500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 573.15 | 1.12 | 7.76 | -4.83 | 3.44 | -1.98 | 1.03 | 1.58 | -2.47 | 9.1 | 65.07 | 22 | 23.9 | 17.3 |
| 579.86 | 1.12 | 7.76 | -4.87 | 3.44 | -2.04 | 1.54 | -- | -2.5 | 8.96 | 66 | 21 | 23.9 | 17.1 |
| 576.28 | 1.12 | 7.76 | -4.8 | 3.41 | -1.99 | -- | 1.89 | -2.49 | 9.06 | 65.6 | 21 | 23.9 | 17.1 |
| 587.76 | 1.13 | 7.77 | -4.81 | 3.4 | -2.04 | -- | -- | -2.51 | 8.96 | 66.2 | 21 | 23.9 | 17.2 |
| 1054.59 | 1.52 | 7.87 | -4.83 | -- | -1.51 | -- | 1.08 | -2.57 | -- | 74 | 6 | 22.9 | 19.2 |
| 679.26 | 1.22 | 7.77 | -4.86 | 2.89 | -- | 1.19 | -- | -2.39 | 10.9 | -- | -- | -- | -- |
| 685.24 | 1.23 | 7.77 | -4.81 | 2.88 | -- | -- | -- | -2.39 | 10.9 | -- | -- | -- | -- |
| 911.35 | 1.41 | 7.87 | -4.78 | -- | -2.26 | -- | -- | -2.53 | -- | 64.79 | 2 | 23.5 | 24 |
| 1204.27 | 1.62 | 7.64 | -- | 3.46 | -1.65 | -- | -- | -1.88 | 9.56 | 65 | 43 | 0.551 | 16.5 |
| 1202.1 | 1.62 | 7.84 | -4.87 | -- | -- | -- | -- | -2.41 | -- | -- | -- | -- | -- |
| 1294.04 | 1.68 | 7.65 | -- | 2.93 | -- | -- | -- | -1.85 | 11 | -- | -- | -- | -- |
| 1513.1 | 1.82 | 7.75 | -- | -- | -2.36 | -- | -- | -2.01 | -- | 64.27 | 2 | 0.13 | 24 |
| 1827.42 | 2 | 7.72 | -- | -- | -- | -- | -- | -1.87 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 554.21 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 2 | 554.28 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 3 | 554.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 4 | 554.50 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 8 | 555.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 10 | 555.39 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 11 | 555.49 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 12 | 555.76 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 14 | 556.20 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 26 | 557.91 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 72 | 562.39 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 85 | 563.76 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 95 | 564.53 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 119 | 566.12 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 129 | 566.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 134 | 567.01 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 146 | 567.68 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 157 | 568.45 | wind | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 342 | 576.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 348 | 576.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 374 | 577.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 376 | 577.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 433 | 578.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 440 | 579.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 446 | 579.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 487 | 580.02 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 525 | 580.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 540 | 581.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 585 | 581.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 589 | 581.96 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 14 |
| 590 | 581.96 | radiation | 30 | 90 | < th | dose dependent | rect. | 24 | 16 |
| 592 | 582.00 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 608 | 582.39 | wind | 5 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 704 | 583.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 716 | 583.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 727 | 583.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 731 | 583.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 756 | 584.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 771 | 584.25 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 831 | 585.14 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 836 | 585.19 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 898 | 585.82 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 905 | 585.89 | radiation | 20 | 90 | < th | dose independent | rect. | 24 | 17 |
| 946 | 586.46 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 968 | 586.72 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 989 | 586.90 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |