Os01g0565800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os01g0565800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.09 | 0.534 | 3.82 | 1.52 | 1.1 | 1.49 | -1.56 | -8.02 | 0.461 | 23.9 | 29.9 | 1694 | -- | -- |
| 137.37 | 0.546 | 3.9 | 0.992 | 1.19 | 1.36 | -1.27 | -- | 0.773 | 0.52 | 19.2 | 7079 | -- | -- |
| 137.51 | 0.546 | 3.84 | 1.48 | 1.15 | 1.57 | -- | -7.84 | 0.496 | 23.8 | 29.8 | 2116 | -- | -- |
| 142.09 | 0.555 | 3.91 | 0.987 | 1.12 | 1.05 | -- | -- | 0.704 | 0.313 | 19.11 | 23144 | -- | -- |
| 210.35 | 0.679 | 3.93 | 0.352 | -- | 0.869 | -- | -2.59 | 0.406 | -- | 29.8 | 2116 | -- | -- |
| 146.83 | 0.568 | 3.98 | -0.0717 | 1.08 | -- | -1.56 | -- | 0.367 | 0.138 | -- | -- | -- | -- |
| 157.33 | 0.587 | 3.98 | -0.0112 | 1.09 | -- | -- | -- | 0.374 | 0.276 | -- | -- | -- | -- |
| 200.56 | 0.662 | 3.95 | 0.156 | -- | 0.657 | -- | -- | 0.432 | -- | 28.77 | 1642 | -- | -- |
| 145.04 | 0.561 | 3.91 | -- | 1.18 | 0.755 | -- | -- | 0.686 | 0.107 | 29.18 | 9314 | -- | -- |
| 231.65 | 0.711 | 3.96 | 0.0247 | -- | -- | -- | -- | 0.391 | -- | -- | -- | -- | -- |
| 157.33 | 0.587 | 3.98 | -- | 1.09 | -- | -- | -- | 0.375 | 0.275 | -- | -- | -- | -- |
| 200.17 | 0.661 | 3.95 | -- | -- | 0.647 | -- | -- | 0.407 | -- | 28.5 | 8896 | -- | -- |
| 231.67 | 0.71 | 3.96 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.49 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 3 | 127.59 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 127.63 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 22 |
| 6 | 127.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 16 | 128.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 13 |
| 24 | 128.31 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 25 | 128.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 22 |
| 34 | 128.48 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 46 | 128.51 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 52 | 128.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 55 | 128.63 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 61 | 128.71 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 75 | 128.86 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 81 | 128.89 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 85 | 128.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 90 | 128.97 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 94 | 128.99 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 99 | 129.01 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 106 | 129.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 118 | 129.06 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 140 | 129.08 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 145 | 129.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 151 | 129.09 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 159 | 129.10 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 161 | 129.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 176 | 129.12 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 194 | 129.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 217 | 129.15 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 222 | 129.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 229 | 129.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 233 | 129.17 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 253 | 129.18 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 256 | 129.18 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 286 | 129.21 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 289 | 129.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 292 | 129.22 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 300 | 129.22 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 311 | 129.23 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 323 | 129.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 340 | 129.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 360 | 129.26 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 371 | 129.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 402 | 129.29 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 403 | 129.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 407 | 129.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 412 | 129.30 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 420 | 129.31 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 17 |
| 424 | 129.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 432 | 129.32 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 442 | 129.33 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 447 | 129.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 448 | 129.34 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 460 | 129.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 468 | 129.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 475 | 129.36 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 487 | 129.37 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 496 | 129.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 503 | 129.39 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 572 | 129.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 18 |
| 576 | 129.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 599 | 129.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 647 | 129.47 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 22 |
| 727 | 129.51 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 820 | 129.56 | wind | 5 | 43200 | > th | dose independent | sin | 14 | NA |
| 849 | 129.57 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 862 | 129.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 943 | 129.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 975 | 129.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 995 | 129.64 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 996 | 129.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 6 |