Os03g0297000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os03g0297000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.62 | 0.469 | 11.6 | 1.37 | 0.517 | -1.25 | -0.801 | -1.2 | 0.371 | 5.53 | 78.51 | 1154 | -- | -- |
| 101.05 | 0.468 | 11.5 | 1.47 | 0.524 | -1.37 | -0.873 | -- | 0.366 | 5.4 | 76.25 | 1154 | -- | -- |
| 100.89 | 0.468 | 11.6 | 1.37 | 0.532 | -1.22 | -- | -1.17 | 0.365 | 6.07 | 77.89 | 1190 | -- | -- |
| 102.3 | 0.471 | 11.5 | 1.47 | 0.549 | -1.3 | -- | -- | 0.368 | 6.27 | 75.53 | 1215 | -- | -- |
| 111.69 | 0.492 | 11.6 | 1.32 | -- | -1.23 | -- | -1.49 | 0.382 | -- | 81.68 | 950 | -- | -- |
| 140.5 | 0.556 | 11.5 | 1.23 | 0.558 | -- | 0.188 | -- | 0.452 | 8.02 | -- | -- | -- | -- |
| 140.57 | 0.555 | 11.5 | 1.23 | 0.56 | -- | -- | -- | 0.452 | 7.86 | -- | -- | -- | -- |
| 114.18 | 0.498 | 11.5 | 1.47 | -- | -1.39 | -- | -- | 0.385 | -- | 77.33 | 997 | -- | -- |
| 155.8 | 0.581 | 11.5 | -- | 0.592 | -1.12 | -- | -- | 0.348 | 6.45 | 114.8 | 1264 | -- | -- |
| 157.61 | 0.587 | 11.5 | 1.24 | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
| 180.73 | 0.629 | 11.6 | -- | 0.569 | -- | -- | -- | 0.314 | 7.71 | -- | -- | -- | -- |
| 164.13 | 0.597 | 11.6 | -- | -- | -1.16 | -- | -- | 0.334 | -- | 127 | 796 | -- | -- |
| 198.21 | 0.657 | 11.6 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.41 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 2 | 99.50 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 3 | 99.54 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 7 | 101.03 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 10 | 101.32 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 32 | 102.26 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 37 | 102.49 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 18 |
| 38 | 102.50 | humidity | 70 | 1440 | < th | dose dependent | rect. | 14 | 18 |
| 41 | 102.57 | humidity | 70 | 1440 | < th | dose dependent | rect. | 14 | 6 |
| 143 | 103.24 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 185 | 103.66 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 201 | 103.68 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 226 | 103.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 232 | 103.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 236 | 103.77 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 250 | 103.82 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 280 | 103.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 283 | 103.91 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 375 | 104.07 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 637 | 104.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 641 | 105.02 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 841 | 105.47 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 857 | 105.47 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 874 | 105.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 945 | 105.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 963 | 105.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 966 | 105.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 12 |