Os05g0346400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os05g0346400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.04 | 0.329 | 12.3 | -1.61 | 1.3 | 0.981 | 0.289 | -3.04 | -0.584 | 14.4 | 25.19 | 1379 | -- | -- |
| 52.21 | 0.337 | 12.2 | -0.764 | 1.32 | 0.679 | 0.434 | -- | -0.338 | 14.3 | 26.04 | 1278 | -- | -- |
| 49.33 | 0.327 | 12.3 | -1.59 | 1.3 | 0.979 | -- | -3.01 | -0.583 | 14.4 | 25.1 | 1361 | -- | -- |
| 52.87 | 0.339 | 12.2 | -0.753 | 1.33 | 0.68 | -- | -- | -0.345 | 14.3 | 25.8 | 1273 | -- | -- |
| 87.63 | 0.436 | 12.3 | -1.23 | -- | 1.85 | -- | -2.26 | -0.744 | -- | 22.98 | 14 | -- | -- |
| 71.21 | 0.396 | 12.2 | -0.541 | 1.22 | -- | 0.258 | -- | -0.297 | 14.4 | -- | -- | -- | -- |
| 71.45 | 0.396 | 12.2 | -0.534 | 1.22 | -- | -- | -- | -0.295 | 14.4 | -- | -- | -- | -- |
| 89.88 | 0.442 | 12.3 | -0.915 | -- | 1.7 | -- | -- | -0.598 | -- | 21.19 | 13 | -- | -- |
| 66.84 | 0.381 | 12.2 | -- | 1.33 | 0.585 | -- | -- | -0.265 | 14.2 | 26.4 | 1140 | -- | -- |
| 159.3 | 0.59 | 12.2 | -0.585 | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
| 78.95 | 0.416 | 12.2 | -- | 1.23 | -- | -- | -- | -0.236 | 14.4 | -- | -- | -- | -- |
| 109.8 | 0.488 | 12.2 | -- | -- | 1.51 | -- | -- | -0.434 | -- | 23.33 | 12 | -- | -- |
| 168.33 | 0.606 | 12.2 | -- | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 4 | 46.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 68 | 47.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 76 | 47.86 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 216 | 48.91 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 299 | 49.16 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 354 | 49.63 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 366 | 49.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 394 | 49.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 399 | 49.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 412 | 50.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 414 | 50.07 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 13 |
| 438 | 50.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 459 | 50.28 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 501 | 50.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 504 | 50.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 527 | 50.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 578 | 50.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 645 | 50.82 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 674 | 50.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 685 | 50.93 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 732 | 51.03 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 792 | 51.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 839 | 51.26 | humidity | 90 | 1440 | < th | dose dependent | sin | 18 | NA |
| 845 | 51.27 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 898 | 51.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 972 | 51.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 982 | 51.54 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 19 |