BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0287900 Os03g0287900|AK063663
(147 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0287900 Similar to Protein disulfide isomerase 251 1e-67
Os05g0156300 Similar to Protein disulfide isomerase 84 5e-17
Os01g0339900 Thioredoxin domain 2 containing protein 83 9e-17
Os09g0451500 Thioredoxin domain 2 containing protein 69 9e-13
Os11g0199200 Similar to Protein disulfide isomerase (Fragment) 63 8e-11
>Os03g0287900 Similar to Protein disulfide isomerase
Length = 147
Score = 251 bits (642), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/147 (86%), Positives = 127/147 (86%)
Query: 1 MDLAPGXXXXXXXXXXXXXXXXXXXXSGAEVITLTEETFSDKIKEKDTVWFVKFCVPWCK 60
MDLAPG SGAEVITLTEETFSDKIKEKDTVWFVKFCVPWCK
Sbjct: 1 MDLAPGRRARLLVALALVVLVALAARSGAEVITLTEETFSDKIKEKDTVWFVKFCVPWCK 60
Query: 61 HCKNLGTLWEDLGKVMEGADEIEIGQVDCGVSKPVCSKVDIHSYPTFKVFYEGEEVAKYK 120
HCKNLGTLWEDLGKVMEGADEIEIGQVDCGVSKPVCSKVDIHSYPTFKVFYEGEEVAKYK
Sbjct: 61 HCKNLGTLWEDLGKVMEGADEIEIGQVDCGVSKPVCSKVDIHSYPTFKVFYEGEEVAKYK 120
Query: 121 GPRNVESLKNFVSDEAEKAGEAKLQDS 147
GPRNVESLKNFVSDEAEKAGEAKLQDS
Sbjct: 121 GPRNVESLKNFVSDEAEKAGEAKLQDS 147
>Os05g0156300 Similar to Protein disulfide isomerase
Length = 366
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 30 EVITLTEETFSDKIKEKDTVWFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQVDC 89
+V+ LTE TF ++ + D V+F PWC HCK L +E LG + A + I +VDC
Sbjct: 31 DVLALTESTFEKEVGQ-DRAALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDC 89
Query: 90 GVSKPVCSKVDIHSYPTFKVFYEGE-EVAKYKGPRNVESLKNFVSDEA 136
K VCSK + YPT + F +G E KY+G R E+L +V+ EA
Sbjct: 90 DEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRTAEALAEYVNSEA 137
>Os01g0339900 Thioredoxin domain 2 containing protein
Length = 371
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 28 GAEVITLTEETFSDKIKEKDTVWFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQV 87
G +V+ LTE TF ++ + D V+F PWC HCK L +E LG + A + I +V
Sbjct: 34 GDDVVALTESTFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVFIAKV 92
Query: 88 DCGVSKPVCSKVDIHSYPTFKVFYEGE-EVAKYKGPRNVESLKNFVSDEA 136
DC K VCSK + YPT + F +G E KY+G R+ E+L FV+ E
Sbjct: 93 DCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRSAEALAEFVNTEG 142
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 29 AEVITLTEETFSDKIKEKDTVWFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQVD 88
+ V+ L + F + +++ V+F PWC HCK+L ++E L V + D + I +D
Sbjct: 153 SSVVVLGPDNFDSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLDDGVVIANLD 212
Query: 89 CGVSKPVCSKVDIHSYPTFKVFYEGEEVAK-YKGPRNVESLKNFVSDEAEKAGEAKLQ 145
K + K + YPT K F +G + + Y G R ++ F++++ + + K Q
Sbjct: 213 ADKHKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRELDDFVKFINEKCGTSRDTKGQ 270
>Os09g0451500 Thioredoxin domain 2 containing protein
Length = 441
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 32 ITLTEETFSDKIKEKDTVWFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQVDCGV 91
I L + F + + +W V+F PWC HCK L W+ K ++G ++++G VDC
Sbjct: 168 IELNSQNFDKLVTKSKDLWIVEFFAPWCGHCKKLAPEWKKAAKNLKG--QVKLGHVDCDA 225
Query: 92 SKPVCSKVDIHSYPTFKVF-YEGEEVAKYKGPRNVESLKNFVSDEAE 137
K + SK + +PT VF + E Y+G R ++++F ++ E
Sbjct: 226 EKSLMSKYKVEGFPTILVFGADKESPFPYQGARVASAIESFALEQLE 272
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 27 SGAEVITLTEETFSDKIKEKDTVWFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQ 86
+G+ V+ F K+ + V V+F PWC HC+ L +WE V++G +
Sbjct: 27 AGSPVLQFNPNNFKSKVLNSNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGV--ATVAA 84
Query: 87 VDCGVSKPVCSKVDIHSYPTFKVFYEGEEVAKYKGPRNVESLKNFV 132
+D K + + I +PT KVF G+ Y+G R+V+ + F
Sbjct: 85 LDADAHKELAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIVEFA 130
>Os11g0199200 Similar to Protein disulfide isomerase (Fragment)
Length = 512
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 31 VITLTEETFSDKIKEKDTVWFVKFCVPWCKHCKNLGTLWEDLGKVMEGAD-EIEIGQVDC 89
V+TL + F + + K V+F PWC HCK L +E + + D I + +VD
Sbjct: 42 VLTLDADGFDEAVA-KHPFMVVEFYAPWCGHCKKLAPEYEKAAQELSKHDPPIVLAKVDA 100
Query: 90 G--VSKPVCSKVDIHSYPTFKVFY-EGEEVAKYKGPRNVESLKNFV 132
+KP+ +K +I +PT K+F +G+ + +YKGPR E + ++
Sbjct: 101 NDEKNKPLATKYEIQGFPTLKIFRNQGKNIQEYKGPREAEGIVEYL 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,099,157
Number of extensions: 150889
Number of successful extensions: 316
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 8
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)