Os03g0287900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein disulfide isomerase.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0287900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein disulfide isomerase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.46 | 0.288 | 11.1 | -0.587 | 0.702 | 0.502 | 0.0695 | -1.57 | -0.119 | 3.44 | 18.9 | 2763 | -- | -- |
| 38.82 | 0.29 | 11 | -0.48 | 0.72 | 1.05 | -0.0414 | -- | -0.112 | 3.26 | 18.4 | 3024 | -- | -- |
| 37.47 | 0.285 | 11.1 | -0.589 | 0.705 | 0.504 | -- | -1.57 | -0.12 | 3.42 | 18.91 | 2805 | -- | -- |
| 38.77 | 0.29 | 11 | -0.47 | 0.707 | 1.03 | -- | -- | -0.0931 | 3.35 | 18.46 | 3005 | -- | -- |
| 63.65 | 0.372 | 11.1 | -0.567 | -- | 0.915 | -- | -0.873 | -0.109 | -- | 18.41 | 2628 | -- | -- |
| 52.25 | 0.339 | 11 | 0.00611 | 0.733 | -- | -0.115 | -- | 0.0907 | 3.44 | -- | -- | -- | -- |
| 52.29 | 0.339 | 11 | 0.00818 | 0.732 | -- | -- | -- | 0.0914 | 3.43 | -- | -- | -- | -- |
| 64.39 | 0.374 | 11 | -0.479 | -- | 1.16 | -- | -- | -0.0924 | -- | 18.3 | 2619 | -- | -- |
| 42.64 | 0.304 | 11 | -- | 0.69 | 0.77 | -- | -- | 0.00201 | 3.4 | 18 | 2755 | -- | -- |
| 82.38 | 0.424 | 11 | 0.0391 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 52.3 | 0.338 | 11 | -- | 0.732 | -- | -- | -- | 0.0905 | 3.43 | -- | -- | -- | -- |
| 68.48 | 0.385 | 11 | -- | -- | 0.965 | -- | -- | 0.00374 | -- | 17.94 | 2584 | -- | -- |
| 82.43 | 0.424 | 11 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 2 | 35.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 19 | 36.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 90 | 37.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 91 | 37.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 98 | 37.89 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 99 | 37.89 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 100 | 37.89 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 124 | 37.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 128 | 37.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 131 | 37.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 133 | 37.96 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 134 | 37.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 163 | 38.04 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 170 | 38.06 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 209 | 38.13 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 235 | 38.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 268 | 38.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 285 | 38.28 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 299 | 38.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 302 | 38.31 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 327 | 38.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 329 | 38.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 351 | 38.39 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 359 | 38.41 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 361 | 38.41 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 362 | 38.41 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 363 | 38.42 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 373 | 38.43 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 421 | 38.48 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 434 | 38.50 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 443 | 38.51 | wind | 9 | 43200 | > th | dose independent | sin | 2 | NA |
| 452 | 38.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 459 | 38.53 | wind | 9 | 43200 | < th | dose independent | sin | 2 | NA |
| 467 | 38.53 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 473 | 38.54 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 487 | 38.56 | temperature | 20 | 14400 | > th | dose independent | sin | 15 | NA |
| 488 | 38.56 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 504 | 38.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 510 | 38.57 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 511 | 38.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 10 |
| 513 | 38.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 516 | 38.58 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 518 | 38.58 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 519 | 38.58 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 18 |
| 522 | 38.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 524 | 38.59 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 533 | 38.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 542 | 38.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 597 | 38.65 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 604 | 38.66 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 649 | 38.70 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 19 |
| 664 | 38.71 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 697 | 38.74 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 698 | 38.74 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 710 | 38.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 721 | 38.75 | wind | 7 | 43200 | > th | dose dependent | sin | 3 | NA |
| 722 | 38.75 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 736 | 38.76 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 738 | 38.76 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 755 | 38.77 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 765 | 38.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 784 | 38.78 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 804 | 38.80 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 819 | 38.81 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 831 | 38.82 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 836 | 38.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 837 | 38.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 856 | 38.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 872 | 38.85 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 882 | 38.85 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 21 |