BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0283800 Os03g0283800|AK072879
         (157 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0283800  RabGAP/TBC domain containing protein                325   8e-90
Os05g0465100  RabGAP/TBC domain containing protein                260   4e-70
Os08g0337700  RabGAP/TBC domain containing protein                101   3e-22
Os08g0412600  RabGAP/TBC domain containing protein                 73   9e-14

>Os03g0283800 RabGAP/TBC domain containing protein
          Length = 157

 Score =  325 bits (833), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60
           DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL
Sbjct: 1   DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60

Query: 61  VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF 120
           VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF
Sbjct: 61  VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF 120

Query: 121 INMLPWESGQVLCNSLVLSLRYILILIHLMFGTSPLN 157
           INMLPWESGQVLCNSLVLSLRYILILIHLMFGTSPLN
Sbjct: 121 INMLPWESGQVLCNSLVLSLRYILILIHLMFGTSPLN 157



>Os05g0465100 RabGAP/TBC domain containing protein
          Length = 830

 Score =  260 bits (664), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 110/128 (85%), Positives = 122/128 (95%)

Query: 1   DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60
           DLPRTFPGHPALDEDGRNALRRLL AYARHNP+VGYCQAMNFFAGL LL MPEE+AFW L
Sbjct: 261 DLPRTFPGHPALDEDGRNALRRLLLAYARHNPAVGYCQAMNFFAGLLLLLMPEENAFWTL 320

Query: 61  VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF 120
           VG+ID+YFDGY++EEMIESQVDQLVLEE+VRE+FPKLA H+D+LG+QVAWVTGPWFLSIF
Sbjct: 321 VGIIDDYFDGYFSEEMIESQVDQLVLEELVREKFPKLANHLDYLGLQVAWVTGPWFLSIF 380

Query: 121 INMLPWES 128
            N+LPWES
Sbjct: 381 TNVLPWES 388



>Os08g0337700 RabGAP/TBC domain containing protein
          Length = 419

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 1   DLPRTFPGHPALD-EDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMP-EEHAFW 58
           DLPRTFP H  L+ E+G+ +LRR+L  Y+  +  VGYCQ +N+ A L LL M  EE AFW
Sbjct: 187 DLPRTFPCHSWLNSEEGQASLRRVLVGYSFRDSEVGYCQGLNYVAALLLLVMKTEEDAFW 246

Query: 59  ALVGVIDEYF-DGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFL 117
            L  +++    +  YT+ +    V+Q V ++++ ++ P++A H++ +G  V+ V   WFL
Sbjct: 247 MLAVLLENVLVNDCYTDNLSGCHVEQRVFKDLLAKKCPRIAAHLEAMGFDVSLVATEWFL 306

Query: 118 SIFINMLPWES 128
            +F   LP E+
Sbjct: 307 CLFSKTLPSET 317



>Os08g0412600 RabGAP/TBC domain containing protein
          Length = 284

 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 1   DLPRTFPGHPALDED---GRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAF 57
           D+ RTFP H    +    G+ +L  +L AY+ ++  VGY Q M F AGL LL+M EE AF
Sbjct: 132 DISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAF 191

Query: 58  WALV----GVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTG 113
           W LV    G +    +G Y   +   Q      E++V E+ P+L +H     +  +    
Sbjct: 192 WLLVALLKGAVHAPMEGLYQAGLPLVQQYLYQFEKLVLEQMPQLGQHFIEEMINPSMYAS 251

Query: 114 PWFLSIFINMLPW 126
            WF+++F    P+
Sbjct: 252 QWFITVFSYSFPF 264



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.144    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,659,883
Number of extensions: 217445
Number of successful extensions: 580
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 4
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)