BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0268400 Os03g0268400|AK121972
         (361 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0268400  Similar to Mannose-1-phosphate guanyltransfera...   733   0.0  
Os01g0847200  Similar to Mannose-1-phosphate guanyltransfera...   667   0.0  
Os03g0208900  Similar to ADP-glucose pyrophosphorylase (Frag...   193   2e-49
Os08g0237200  Nucleotidyl transferase domain containing protein    75   5e-14

>Os03g0268400 Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
           (ATP-mannose-1- phosphate guanylyltransferase)
           (GDP-mannose pyrophosphorylase) (NDP- hexose
           pyrophosphorylase)
          Length = 361

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120
           LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120

Query: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180
           LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN
Sbjct: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180

Query: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 241 APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK 300
           APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK
Sbjct: 241 APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK 300

Query: 301 HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360
           HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361



>Os01g0847200 Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
           (ATP-mannose-1- phosphate guanylyltransferase)
           (GDP-mannose pyrophosphorylase) (NDP- hexose
           pyrophosphorylase)
          Length = 361

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/361 (89%), Positives = 343/361 (95%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLVDF NKPMILHQIEALKEVGVTEVVLAINY+PEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60

Query: 61  LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120
           LNFLKDFE KLGI ITCSQETEPLGTAGPLALARDKL DGSG+PFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120

Query: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180
           LI+FHKSHGGEATIMVTKVDEPSKYGVVVME+ T  VE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIYLLN 180

Query: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
           PSVLDRIELKPTSIEKEVFPRIA+D  LFA+VLPGFWMD+GQPRDYITGLRLYLDSLRK+
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240

Query: 241 APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK 300
           +  +LA+GAH++GNVLVHE+A IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRG  +KK
Sbjct: 241 STNRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIKK 300

Query: 301 HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360
           HACIS+SIIGWHSTVG WAR+ENMTILGEDVHV DEVY+NGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEIV 360

Query: 361 M 361
           M
Sbjct: 361 M 361



>Os03g0208900 Similar to ADP-glucose pyrophosphorylase (Fragment)
          Length = 415

 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 208/407 (51%), Gaps = 49/407 (12%)

Query: 3   ALILVGG--FGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEV-GVTEVVLAINYQPEV 59
           A+I+VGG   GTR RPL+L+VPKPL     +PM+ H I A + +  + ++ L   Y+   
Sbjct: 10  AVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVHHPISACRRIPNLAQIYLVGFYEERE 69

Query: 60  MLNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFA 119
              ++    ++L + +   +E +P G+AG L   RD + + S     +LN DV S +P  
Sbjct: 70  FALYVSSISNELRVPVRYLREDKPHGSAGGLYSFRDYIMEDSPSHIVLLNCDVCSSFPLP 129

Query: 120 ELIQFHKSHGGEATIMVTKVDEPS--KYGVVVMEDETDKVERFVEKPKVFVGNKINAGIY 177
           ++++ HK +GG  T++V KV   S  ++G +V + ET+++  + EKP+ FV + IN G+Y
Sbjct: 130 DMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETFVSDLINCGVY 189

Query: 178 LLNPSVL-----------DRIELKPTS------------------IEKEVFPRIAADNGL 208
           +  P++            DR  L+  S                  +++++   +A    L
Sbjct: 190 IFTPNIFNAIEDVLKQKKDRANLRRVSSFEALHSATKALPADYVRLDQDILSPLAGKKEL 249

Query: 209 FAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKAPAKLASG-----AHVLGNVLVHETAVI 263
           +      FW  I  P   +    LYL   R  +P  LASG     A ++G+V +H +A +
Sbjct: 250 YTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGDVYIHPSAKV 309

Query: 264 GEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKKHACISSSIIGWHSTVGMWARVE- 322
                IGP+V++     + AG RL  C ++    + ++A +  SI+GW STVG W+RV+ 
Sbjct: 310 HPTAKIGPNVSISANARIGAGARLIHCIILDDVEIMENAVVIHSIVGWKSTVGKWSRVQG 369

Query: 323 --------NMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM 361
                    +TILGE V V DEV     +VLP+K +  S+ + EI++
Sbjct: 370 EGDHNAKLGITILGEAVDVEDEVVVVNSIVLPNKTLNVSV-QEEIIL 415



>Os08g0237200 Nucleotidyl transferase domain containing protein
          Length = 48

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 36/38 (94%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQI 38
          MKALILVGGFGTRLRPLTLS PKPLVDF NKPMILHQ+
Sbjct: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQV 38



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,583,085
Number of extensions: 542509
Number of successful extensions: 997
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)