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Os08g0237200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleotidyl transferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0186) R2 : 0.868
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.79 (0.0509) R2dE : 0.857 R2E : 0.849
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.272 (0.0392) R2dN8 : 0.019 R2N8 : 0.0107
σ : 0.35
deviance : 56.43
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C
peak time of C : --
E
wheather : temperature
threshold : -15.34
memory length : 951
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.95
open length of G : 6.67

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.28 0.323 13.9 -0.421 2.88 -1.64 0.0174 -0.635 -0.336 4.71 8.304 212 20.3 5.67
47.91 0.322 13.9 -0.432 2.88 -1.66 -0.144 -- -0.337 4.68 8.377 199 20.4 5.74
47.19 0.32 13.9 -0.427 2.88 -1.63 -- -0.641 -0.332 4.72 8.826 196 20.4 5.77
47.93 0.322 13.9 -0.409 2.87 -1.67 -- -- -0.323 4.74 9.975 196 20.5 5.72
373.62 0.905 13.9 -0.331 -- -1.12 -- -0.545 -0.254 -- 15.91 29 19.6 6.73
89.47 0.443 13.9 -0.447 2.52 -- 0.0603 -- -0.339 6.12 -- -- -- --
89.47 0.443 13.9 -0.447 2.52 -- -- -- -0.339 6.12 -- -- -- --
118.3 0.507 14.2 -0.0601 -- -2.57 -- -- -0.462 -- -32.7 823 9.67 4.2
52.15 0.336 13.9 -- 2.85 -1.7 -- -- -0.29 4.72 10.74 202 20.5 5.67
418.99 0.956 13.9 -0.376 -- -- -- -- -0.283 -- -- -- -- --
94.74 0.455 13.8 -- 2.51 -- -- -- -0.289 6.13 -- -- -- --
56.43 0.35 13.9 -- -- -2.79 -- -- -0.272 -- -15.34 951 6.95 6.67
422.71 0.96 13.9 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.57 temperature 10.0 270 > th dose dependent rect. 20 5
6 50.28 temperature 10.0 270 > th dose dependent rect. 20 17
15 52.32 temperature 20.0 270 > th dose independent rect. 20 5
16 52.32 precipitation 0.1 90 < th dose independent rect. 3 18
18 52.32 precipitation 0.1 90 < th dose dependent rect. 3 18
22 52.49 precipitation 0.1 90 < th dose independent rect. 21 6
24 52.49 precipitation 0.1 90 < th dose dependent rect. 21 6
27 52.66 temperature 10.0 90 > th dose independent rect. 21 6
28 52.66 temperature 30.0 90 < th dose independent rect. 21 6
29 52.66 humidity 50.0 90 > th dose independent rect. 21 6
32 52.66 atmosphere 995.0 90 > th dose independent rect. 21 6
33 52.66 radiation 1.0 90 < th dose independent rect. 21 6
38 52.66 temperature 10.0 90 > th dose independent rect. 3 18
39 52.66 atmosphere 1015.0 90 < th dose independent rect. 3 18
40 52.66 radiation 1.0 90 < th dose dependent rect. 21 6
45 52.69 wind 9.0 90 < th dose independent rect. 21 6
48 53.00 precipitation 0.1 270 < th dose independent rect. 1 19
49 53.00 precipitation 0.1 270 < th dose dependent rect. 1 19
51 53.14 atmosphere 1015.0 90 < th dose independent rect. 21 6
55 53.25 humidity 50.0 90 > th dose dependent rect. 21 6
56 53.36 wind 9.0 90 < th dose independent rect. 3 18
61 53.66 humidity 60.0 270 > th dose independent rect. 19 7
62 53.67 precipitation 0.1 270 < th dose independent rect. 19 7
63 53.67 precipitation 0.1 270 < th dose dependent rect. 19 7
64 53.69 temperature 10.0 270 > th dose independent rect. 19 7
65 53.69 temperature 30.0 270 < th dose independent rect. 19 7
67 53.69 atmosphere 995.0 270 > th dose independent rect. 19 7
68 53.69 radiation 1.0 270 < th dose independent rect. 19 7
75 53.69 radiation 1.0 270 < th dose dependent rect. 19 7
80 53.74 temperature 10.0 270 > th dose dependent rect. 6 8
81 53.77 wind 9.0 270 < th dose independent rect. 19 7
86 54.00 temperature 10.0 10 > th dose dependent rect. 22 5
98 54.02 temperature 10.0 270 > th dose independent rect. 1 19
99 54.02 atmosphere 1015.0 270 < th dose independent rect. 1 19
108 54.12 wind 9.0 270 < th dose independent rect. 1 19
135 54.39 wind 9.0 90 < th dose dependent rect. 21 6
163 54.66 radiation 40.0 270 < th dose dependent rect. 1 8
167 54.72 atmosphere 995.0 90 > th dose independent rect. 3 18
174 55.05 atmosphere 1015.0 270 < th dose independent rect. 19 7
187 55.40 radiation 20.0 270 < th dose independent rect. 1 8
194 55.61 precipitation 0.1 270 < th dose independent rect. 1 8
195 55.61 wind 9.0 270 < th dose independent rect. 15 15
196 55.61 precipitation 0.1 270 < th dose dependent rect. 1 8
207 55.81 temperature 15.0 270 > th dose independent rect. 6 9
209 55.95 precipitation 0.1 270 < th dose independent rect. 15 15
211 55.95 precipitation 0.1 270 < th dose dependent rect. 15 15
213 55.97 precipitation 0.1 270 < th dose independent rect. 6 9
215 55.97 precipitation 0.1 270 < th dose dependent rect. 6 9
220 56.00 atmosphere 995.0 270 > th dose independent rect. 1 19
222 56.01 wind 9.0 270 < th dose independent rect. 6 9
225 56.09 temperature 30.0 270 < th dose independent rect. 1 8
226 56.09 radiation 40.0 270 < th dose independent rect. 15 15
229 56.12 atmosphere 1015.0 270 < th dose independent rect. 6 9
230 56.12 temperature 10.0 270 > th dose independent rect. 15 15
266 56.44 precipitation 0.1 10 < th dose independent rect. 3 19
267 56.44 precipitation 0.1 10 < th dose dependent rect. 3 19
286 56.50 atmosphere 995.0 270 > th dose independent rect. 6 9
299 56.75 wind 1.0 270 > th dose independent rect. 20 5
308 56.86 radiation 40.0 90 < th dose independent rect. 3 18
321 56.92 wind 7.0 270 < th dose independent rect. 1 8
367 57.12 temperature 10.0 270 > th dose independent rect. 1 8
369 57.12 humidity 50.0 270 > th dose independent rect. 1 8
370 57.12 humidity 70.0 270 > th dose independent rect. 1 8
371 57.12 atmosphere 995.0 270 > th dose independent rect. 1 8
372 57.12 atmosphere 1015.0 270 < th dose independent rect. 1 8
373 57.12 temperature 10.0 270 > th dose independent rect. 9 16
385 57.31 radiation 40.0 90 < th dose independent rect. 3 8
392 57.52 humidity 50.0 270 > th dose independent rect. 6 9
395 57.53 wind 9.0 270 < th dose independent rect. 9 16
401 57.58 humidity 50.0 90 > th dose dependent rect. 3 8
402 57.59 atmosphere 1015.0 10 < th dose independent rect. 22 5
408 57.62 radiation 1.0 270 > th dose independent rect. 6 9
441 57.86 precipitation 0.1 270 < th dose independent rect. 9 16
442 57.86 precipitation 0.1 270 < th dose dependent rect. 9 16
448 57.96 precipitation 0.1 10 < th dose independent rect. 22 5
450 57.96 precipitation 0.1 10 < th dose dependent rect. 22 5
454 57.99 wind 9.0 90 < th dose dependent rect. 3 18
455 58.00 temperature 30.0 90 < th dose independent rect. 3 8
462 58.03 humidity 50.0 270 > th dose dependent rect. 1 8
464 58.04 wind 9.0 10 < th dose independent rect. 22 5
465 58.04 temperature 10.0 10 > th dose independent rect. 22 5
466 58.04 temperature 30.0 10 < th dose independent rect. 22 5
467 58.04 humidity 50.0 10 > th dose independent rect. 22 5
470 58.04 atmosphere 995.0 10 > th dose independent rect. 22 5
471 58.04 radiation 1.0 10 < th dose independent rect. 22 5
476 58.04 temperature 10.0 10 > th dose independent rect. 3 19
478 58.04 atmosphere 1015.0 10 < th dose independent rect. 3 19
480 58.04 radiation 1.0 10 < th dose dependent rect. 22 5
493 58.10 humidity 50.0 10 > th dose dependent rect. 22 5
524 58.29 temperature 10.0 10 > th dose dependent rect. 22 17
527 58.34 wind 9.0 10 < th dose dependent rect. 22 5
528 58.37 humidity 50.0 270 > th dose independent rect. 20 18
529 58.37 wind 9.0 10 < th dose independent rect. 3 19
631 58.68 wind 9.0 270 < th dose independent rect. 14 6
657 58.91 wind 9.0 270 < th dose independent rect. 20 18
663 58.95 atmosphere 995.0 270 > th dose independent rect. 15 15
673 59.01 temperature 10.0 270 > th dose independent rect. 14 6
674 59.01 atmosphere 1015.0 270 < th dose independent rect. 14 6
676 59.01 temperature 10.0 270 > th dose independent rect. 20 18
677 59.01 atmosphere 995.0 270 > th dose independent rect. 20 18
692 59.14 radiation 40.0 270 < th dose independent rect. 1 19
699 59.18 wind 1.0 270 > th dose independent rect. 14 6
701 59.20 precipitation 0.1 270 < th dose independent rect. 14 6
703 59.20 precipitation 0.1 270 < th dose dependent rect. 14 6
724 59.30 atmosphere 1015.0 270 < th dose independent rect. 20 18
747 59.39 radiation 40.0 270 < th dose independent rect. 14 6
804 59.59 atmosphere 995.0 10 > th dose independent rect. 3 19
838 59.75 humidity 70.0 90 > th dose independent rect. 3 8
844 59.77 wind 9.0 90 < th dose dependent rect. 3 8
929 60.18 atmosphere 1015.0 270 < th dose independent rect. 9 16
939 60.22 temperature 10.0 270 > th dose dependent rect. 7 18
943 60.25 radiation 30.0 14400 < th dose dependent rect. 22 6
956 60.27 precipitation 0.1 270 < th dose independent rect. 20 18
958 60.27 precipitation 0.1 270 < th dose dependent rect. 20 18
974 60.39 radiation 40.0 90 < th dose dependent rect. 3 18
982 60.42 wind 1.0 270 > th dose independent rect. 1 19