BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0237200 Os08g0237200|J090055N08
         (48 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0237200  Nucleotidyl transferase domain containing protein    99   7e-22
Os01g0847200  Similar to Mannose-1-phosphate guanyltransfera...    81   2e-16
Os03g0268400  Similar to Mannose-1-phosphate guanyltransfera...    75   8e-15

>Os08g0237200 Nucleotidyl transferase domain containing protein
          Length = 48

 Score = 99.0 bits (245), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQVICGFASTLME 48
          MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQVICGFASTLME
Sbjct: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQVICGFASTLME 48



>Os01g0847200 Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
          (ATP-mannose-1- phosphate guanylyltransferase)
          (GDP-mannose pyrophosphorylase) (NDP- hexose
          pyrophosphorylase)
          Length = 361

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQV 38
          MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQ+
Sbjct: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQI 38



>Os03g0268400 Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
          (ATP-mannose-1- phosphate guanylyltransferase)
          (GDP-mannose pyrophosphorylase) (NDP- hexose
          pyrophosphorylase)
          Length = 361

 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 36/38 (94%)

Query: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQV 38
          MKALILVGGFGTRLRPLTLS PKPLVDF NKPMILHQ+
Sbjct: 1  MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQI 38



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.146    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,577,648
Number of extensions: 39724
Number of successful extensions: 91
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 48
Length of database: 17,035,801
Length adjustment: 21
Effective length of query: 27
Effective length of database: 15,939,307
Effective search space: 430361289
Effective search space used: 430361289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)