FiT-DB / Search/ Help/ Sample detail
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Os03g0268400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.67 | 0.435 | 9.33 | 0.528 | 2.92 | 0.787 | 1.49 | -0.127 | 0.282 | 0.389 | 20.6 | 1426 | -- | -- |
| 85.64 | 0.431 | 9.32 | 0.551 | 2.92 | 0.793 | 1.48 | -- | 0.283 | 0.389 | 20.73 | 1410 | -- | -- |
| 95 | 0.454 | 9.33 | 0.471 | 2.93 | 0.799 | -- | -0.0991 | 0.277 | 0.424 | 20.5 | 1516 | -- | -- |
| 95.02 | 0.454 | 9.33 | 0.484 | 2.93 | 0.818 | -- | -- | 0.278 | 0.423 | 20.54 | 1473 | -- | -- |
| 578.56 | 1.12 | 9.3 | 0.631 | -- | 1.27 | -- | 0.179 | 0.151 | -- | 22.3 | 894 | -- | -- |
| 100.32 | 0.47 | 9.28 | 0.884 | 2.95 | -- | 1.46 | -- | 0.474 | 0.405 | -- | -- | -- | -- |
| 109.52 | 0.49 | 9.28 | 0.827 | 2.94 | -- | -- | -- | 0.466 | 0.438 | -- | -- | -- | -- |
| 502.72 | 1.04 | 9.37 | 0.605 | -- | 1.92 | -- | -- | -0.0964 | -- | 25.3 | 908 | -- | -- |
| 100.41 | 0.467 | 9.32 | -- | 2.91 | 1.07 | -- | -- | 0.23 | 0.431 | 19.5 | 2996 | -- | -- |
| 652.98 | 1.19 | 9.23 | 0.927 | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
| 127.52 | 0.528 | 9.31 | -- | 2.95 | -- | -- | -- | 0.374 | 0.452 | -- | -- | -- | -- |
| 502.93 | 1.04 | 9.4 | -- | -- | 2.06 | -- | -- | -0.25 | -- | 25.26 | 908 | -- | -- |
| 675.65 | 1.21 | 9.25 | -- | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 15 | 82.48 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 18 | 82.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 25 | 82.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 28 | 82.96 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 30 | 83.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 38 | 83.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 47 | 83.53 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 54 | 83.68 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 60 | 83.76 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 62 | 83.77 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 78 | 83.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 87 | 84.01 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 92 | 84.04 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 94 | 84.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 98 | 84.11 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 111 | 84.22 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 125 | 84.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 8 |
| 130 | 84.37 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 138 | 84.41 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 140 | 84.44 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 148 | 84.49 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 185 | 84.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 193 | 84.70 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 201 | 84.73 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 205 | 84.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 215 | 84.77 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 236 | 84.84 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 237 | 84.84 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 240 | 84.87 | temperature | 20.0 | 720 | > th | dose independent | sin | 14 | NA |
| 242 | 84.88 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 250 | 84.90 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 253 | 84.91 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 265 | 84.95 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 271 | 84.96 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 283 | 84.99 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 286 | 85.00 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 9 |
| 299 | 85.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 309 | 85.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 329 | 85.12 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 331 | 85.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 332 | 85.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 340 | 85.15 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 343 | 85.17 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 375 | 85.24 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 389 | 85.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 405 | 85.29 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 433 | 85.35 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 439 | 85.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 441 | 85.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 459 | 85.40 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 460 | 85.40 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 473 | 85.42 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 479 | 85.43 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 484 | 85.44 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 497 | 85.47 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 500 | 85.47 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 503 | 85.48 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 513 | 85.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 514 | 85.50 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 518 | 85.50 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 532 | 85.53 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 534 | 85.53 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 537 | 85.53 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 595 | 85.62 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 614 | 85.67 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 669 | 85.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 670 | 85.76 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 696 | 85.79 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 720 | 85.83 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 733 | 85.84 | wind | 1.0 | 720 | < th | dose independent | rect. | 13 | 12 |
| 740 | 85.85 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 742 | 85.85 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 776 | 85.91 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 780 | 85.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 797 | 85.94 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 812 | 85.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 821 | 85.96 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 845 | 85.99 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 849 | 86.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 858 | 86.01 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 866 | 86.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 873 | 86.03 | wind | 1.0 | 720 | < th | dose independent | rect. | 11 | 14 |
| 883 | 86.03 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 890 | 86.04 | temperature | 25.0 | 10 | < th | dose dependent | sin | 15 | NA |
| 898 | 86.05 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 919 | 86.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 925 | 86.07 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 933 | 86.09 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 943 | 86.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 948 | 86.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 971 | 86.12 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 984 | 86.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
