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Os01g0847200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0236) R2 : 0.903
β1 : -0.878 (0.0864) R2dD : 0.0226 R2D : 0.0122
β2 : 4.21 (0.0668) R2dC : 1.02 R2C : 0.574
β3 : -2.54 (0.0786) R2dE : 0.265 R2E : -0.143
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.585 (0.0503) R2dN8 : 0.0382 R2N8 : 0.0132
σ : 0.44
deviance : 89.45
__
_____
C
peak time of C : 5.14
E
wheather : temperature
threshold : 10.92
memory length : 265
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.9
open length of G : 6.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.99 0.443 12 -0.889 4.23 -2.51 -0.238 -0.415 -0.588 5.16 10.36 264 20 6.05
89.2 0.44 12 -0.872 4.22 -2.52 -0.317 -- -0.591 5.15 10.51 262 20 6.1
89.04 0.439 12 -0.888 4.24 -2.53 -- -0.517 -0.586 5.14 10.35 265 19.9 6.13
89.45 0.44 12 -0.878 4.21 -2.54 -- -- -0.585 5.14 10.92 265 19.9 6.12
150.81 0.572 12 -0.175 -- -3.81 -- 1.95 -0.338 -- -59.15 1013 4.82 10.7
166.49 0.605 12 -0.969 3.7 -- -0.119 -- -0.621 6.65 -- -- -- --
166.52 0.604 12 -0.971 3.7 -- -- -- -0.62 6.65 -- -- -- --
108.33 0.485 12.1 -0.912 -- -3.89 -- -- -0.623 -- -108.5 1040 5.53 8.85
108.53 0.485 12 -- 4.22 -2.65 -- -- -0.45 5.14 12.72 264 19.9 6.21
880.89 1.39 12.1 -0.883 -- -- -- -- -0.546 -- -- -- -- --
191.35 0.647 12 -- 3.69 -- -- -- -0.512 6.67 -- -- -- --
125.38 0.522 12.1 -- -- -4.12 -- -- -0.583 -- -47.62 1036 5.58 8.7
901.47 1.4 12.1 -- -- -- -- -- -0.448 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.26 temperature 10.0 270 > th dose dependent rect. 20 6
4 93.40 temperature 15.0 270 > th dose dependent rect. 21 4
9 94.51 temperature 20.0 270 > th dose independent rect. 21 4
10 94.62 temperature 20.0 270 > th dose independent rect. 20 6
19 99.24 temperature 10.0 270 > th dose dependent rect. 20 18
40 104.03 atmosphere 1015.0 90 < th dose independent rect. 21 6
43 104.27 precipitation 0.1 270 < th dose independent rect. 2 18
44 104.27 temperature 15.0 10 > th dose dependent rect. 22 5
45 104.27 precipitation 0.1 270 < th dose dependent rect. 2 18
53 105.37 wind 9.0 270 < th dose independent rect. 2 18
54 105.38 temperature 10.0 270 > th dose independent rect. 20 6
55 105.38 temperature 30.0 270 < th dose independent rect. 20 6
56 105.38 humidity 50.0 270 > th dose independent rect. 20 6
59 105.38 atmosphere 995.0 270 > th dose independent rect. 20 6
60 105.38 radiation 1.0 270 < th dose independent rect. 20 6
65 105.38 temperature 10.0 270 > th dose independent rect. 2 18
66 105.38 atmosphere 1015.0 270 < th dose independent rect. 2 18
67 105.38 radiation 1.0 270 < th dose dependent rect. 20 6
76 105.54 wind 9.0 270 < th dose independent rect. 20 6
77 105.61 precipitation 0.1 270 < th dose independent rect. 1 8
78 105.61 precipitation 0.1 270 < th dose dependent rect. 1 8
82 105.84 precipitation 0.1 270 < th dose independent rect. 20 6
83 105.84 precipitation 0.1 270 < th dose dependent rect. 20 6
85 105.95 atmosphere 1015.0 270 < th dose independent rect. 21 4
109 106.09 radiation 30.0 270 < th dose independent rect. 1 8
119 106.55 temperature 20.0 10 > th dose independent rect. 22 6
121 106.62 precipitation 0.1 270 < th dose independent rect. 1 20
122 106.62 precipitation 0.1 270 < th dose dependent rect. 1 20
149 107.03 temperature 30.0 270 < th dose independent rect. 1 8
152 107.08 humidity 50.0 90 > th dose dependent rect. 21 6
164 107.71 temperature 10.0 270 > th dose independent rect. 21 4
165 107.71 temperature 30.0 270 < th dose independent rect. 21 4
166 107.71 humidity 50.0 270 > th dose independent rect. 21 4
169 107.71 atmosphere 995.0 270 > th dose independent rect. 21 4
170 107.71 radiation 1.0 270 < th dose independent rect. 21 4
175 107.71 temperature 10.0 270 > th dose independent rect. 1 20
176 107.71 radiation 1.0 270 < th dose dependent rect. 21 4
182 107.81 wind 9.0 270 < th dose independent rect. 1 20
186 107.85 wind 9.0 270 < th dose independent rect. 21 4
187 107.87 wind 9.0 90 < th dose dependent rect. 21 6
188 107.88 precipitation 0.1 270 < th dose independent rect. 21 4
189 107.88 wind 7.0 270 < th dose independent rect. 1 8
190 107.88 precipitation 0.1 270 < th dose dependent rect. 21 4
195 108.07 humidity 70.0 270 > th dose independent rect. 1 8
202 108.41 temperature 10.0 270 > th dose independent rect. 1 8
204 108.41 humidity 50.0 270 > th dose independent rect. 1 8
205 108.41 atmosphere 995.0 270 > th dose independent rect. 1 8
206 108.41 atmosphere 1015.0 270 < th dose independent rect. 1 8
207 108.41 temperature 10.0 270 > th dose independent rect. 9 16
255 109.39 wind 9.0 270 < th dose independent rect. 9 16
256 109.41 wind 9.0 270 < th dose independent rect. 15 15
257 109.43 radiation 40.0 270 < th dose dependent rect. 1 8
258 109.44 humidity 50.0 270 > th dose dependent rect. 1 9
286 109.97 temperature 15.0 270 > th dose independent rect. 6 9
288 110.00 humidity 50.0 270 > th dose dependent rect. 21 4
291 110.12 precipitation 0.1 270 < th dose independent rect. 15 15
292 110.12 precipitation 0.1 270 < th dose dependent rect. 15 15
293 110.14 atmosphere 995.0 90 > th dose independent rect. 3 18
294 110.16 atmosphere 1015.0 270 < th dose independent rect. 20 18
295 110.19 precipitation 0.1 270 < th dose independent rect. 6 9
296 110.19 precipitation 0.1 270 < th dose dependent rect. 6 9
301 110.39 radiation 40.0 270 < th dose independent rect. 15 15
303 110.41 atmosphere 1015.0 270 < th dose independent rect. 6 9
304 110.41 temperature 10.0 270 > th dose independent rect. 15 15
309 110.54 precipitation 0.1 270 < th dose independent rect. 9 16
310 110.54 precipitation 0.1 270 < th dose dependent rect. 9 16
312 110.57 radiation 40.0 90 < th dose independent rect. 3 8
318 110.70 wind 9.0 270 < th dose independent rect. 6 9
320 110.70 wind 9.0 270 < th dose dependent rect. 21 4
322 110.79 atmosphere 995.0 270 > th dose independent rect. 6 9
371 111.48 temperature 15.0 270 > th dose independent rect. 20 18
376 111.62 humidity 50.0 90 > th dose dependent rect. 3 8
377 111.63 atmosphere 1015.0 270 < th dose independent rect. 9 16
383 111.77 wind 9.0 270 < th dose independent rect. 14 6
402 111.94 temperature 30.0 90 < th dose independent rect. 3 8
416 112.17 temperature 10.0 270 > th dose dependent rect. 7 7
431 112.38 temperature 10.0 270 > th dose independent rect. 14 6
432 112.38 atmosphere 1015.0 270 < th dose independent rect. 14 6
434 112.38 atmosphere 995.0 270 > th dose independent rect. 20 18
435 112.49 temperature 15.0 270 > th dose independent rect. 21 16
436 112.49 wind 9.0 270 < th dose independent rect. 20 18
437 112.53 wind 1.0 270 > th dose independent rect. 20 6
439 112.58 precipitation 0.1 90 < th dose independent rect. 3 8
441 112.58 precipitation 0.1 90 < th dose dependent rect. 3 8
442 112.58 temperature 10.0 10 > th dose dependent rect. 22 18
449 112.74 wind 1.0 270 > th dose independent rect. 14 6
450 112.76 wind 9.0 270 < th dose independent rect. 13 8
466 112.95 precipitation 0.1 10 < th dose independent rect. 3 19
467 112.95 precipitation 0.1 10 < th dose dependent rect. 3 19
503 113.32 precipitation 0.1 270 < th dose independent rect. 14 6
505 113.32 precipitation 0.1 270 < th dose dependent rect. 14 6
511 113.41 wind 9.0 270 < th dose independent rect. 21 16
520 113.48 wind 9.0 90 < th dose dependent rect. 3 8
528 113.50 radiation 1.0 270 > th dose independent rect. 6 9
540 113.71 atmosphere 1015.0 10 < th dose independent rect. 22 5
548 113.87 radiation 40.0 270 < th dose independent rect. 14 6
604 114.37 humidity 50.0 270 > th dose independent rect. 20 18
641 114.62 temperature 10.0 90 > th dose dependent rect. 9 18
646 114.68 temperature 10.0 90 > th dose independent rect. 3 8
647 114.68 atmosphere 995.0 90 > th dose independent rect. 3 8
648 114.68 atmosphere 1015.0 90 < th dose independent rect. 3 8
665 115.01 temperature 20.0 10 > th dose independent rect. 22 18
667 115.07 humidity 60.0 90 > th dose independent rect. 3 8
683 115.27 precipitation 0.1 270 < th dose independent rect. 20 18
685 115.27 precipitation 0.1 270 < th dose dependent rect. 20 18
728 115.61 humidity 50.0 270 > th dose independent rect. 21 16
737 115.66 wind 9.0 90 < th dose independent rect. 3 8
743 115.75 wind 9.0 10 < th dose dependent rect. 22 5
752 115.85 wind 1.0 270 > th dose independent rect. 2 18
759 115.90 humidity 50.0 270 > th dose independent rect. 6 9
764 115.97 atmosphere 995.0 270 > th dose independent rect. 9 16
812 116.30 radiation 40.0 90 < th dose independent rect. 3 18
884 116.61 atmosphere 995.0 270 > th dose independent rect. 15 15
910 116.66 humidity 50.0 10 > th dose dependent rect. 22 5
990 116.99 wind 9.0 270 < th dose dependent rect. 1 8