BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0237200 Os08g0237200|J090055N08
         (48 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39770.1  | chr2:16589401-16590741 FORWARD LENGTH=362           80   2e-16
AT3G55590.1  | chr3:20617479-20618881 FORWARD LENGTH=365           79   5e-16

>AT2G39770.1 | chr2:16589401-16590741 FORWARD LENGTH=362
          Length = 361

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQV 38
          MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQ+
Sbjct: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQI 38



>AT3G55590.1 | chr3:20617479-20618881 FORWARD LENGTH=365
          Length = 364

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1  MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQV 38
          MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQ+
Sbjct: 1  MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQI 38



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.146    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,046,290
Number of extensions: 27392
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 48
Length of database: 11,106,569
Length adjustment: 22
Effective length of query: 26
Effective length of database: 10,503,417
Effective search space: 273088842
Effective search space used: 273088842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)