Os03g0208900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADP-glucose pyrophosphorylase (Fragment).
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Os03g0208900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADP-glucose pyrophosphorylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.39 | 0.337 | 8.19 | 0.00414 | 0.908 | 1.18 | 0.529 | -2.82 | 0.0898 | 3.79 | 24.9 | 1433 | -- | -- |
| 62.61 | 0.369 | 8.32 | -0.585 | 0.946 | 1 | 0.61 | -- | -0.0461 | 3.42 | 23 | 3830 | -- | -- |
| 52.11 | 0.336 | 8.19 | 0.00304 | 0.927 | 1.16 | -- | -2.79 | 0.094 | 3.73 | 24.8 | 1388 | -- | -- |
| 60.33 | 0.362 | 8.27 | -0.437 | 0.851 | 1.19 | -- | -- | -0.108 | 3.63 | 21.4 | 5295 | -- | -- |
| 85.28 | 0.43 | 8.2 | -0.0454 | -- | 1.22 | -- | -2.41 | 0.109 | -- | 24.7 | 1743 | -- | -- |
| 89.85 | 0.444 | 8.37 | -1.18 | 0.809 | -- | 0.693 | -- | -0.521 | 3.84 | -- | -- | -- | -- |
| 91.26 | 0.447 | 8.37 | -1.19 | 0.812 | -- | -- | -- | -0.524 | 3.81 | -- | -- | -- | -- |
| 87.19 | 0.437 | 8.29 | -0.95 | -- | 0.689 | -- | -- | -0.137 | -- | 24.59 | 1755 | -- | -- |
| 61.53 | 0.365 | 8.25 | -- | 0.843 | 1.38 | -- | -- | 0.00116 | 3.6 | 21 | 8080 | -- | -- |
| 127.58 | 0.528 | 8.37 | -1.16 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 128.68 | 0.531 | 8.34 | -- | 0.789 | -- | -- | -- | -0.392 | 3.82 | -- | -- | -- | -- |
| 100.8 | 0.468 | 8.26 | -- | -- | 1.34 | -- | -- | -0.0212 | -- | 20.7 | 7666 | -- | -- |
| 162.95 | 0.596 | 8.34 | -- | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 2 | 47.99 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 4 | 48.13 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 10 | 48.41 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 12 | 48.49 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 13 | 48.50 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 41 | 48.67 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 60 | 48.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 74 | 48.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 85 | 49.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 111 | 49.34 | radiation | 10 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 127 | 49.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 140 | 49.49 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 144 | 49.50 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 151 | 49.54 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 159 | 49.56 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 160 | 49.56 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 202 | 49.62 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 214 | 49.64 | radiation | 30 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 265 | 49.73 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 366 | 49.90 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 428 | 49.94 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 541 | 50.03 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 546 | 50.04 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 613 | 50.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 616 | 50.14 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 628 | 50.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 676 | 50.27 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 683 | 50.29 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 708 | 50.33 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 847 | 50.48 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 850 | 50.49 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 911 | 50.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 930 | 50.56 | radiation | 40 | 43200 | < th | dose dependent | sin | 9 | NA |
| 986 | 50.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 21 |