BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0208900 Os03g0208900|AK070806
         (415 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0208900  Similar to ADP-glucose pyrophosphorylase (Frag...   834   0.0  
Os03g0268400  Similar to Mannose-1-phosphate guanyltransfera...   193   2e-49
Os01g0847200  Similar to Mannose-1-phosphate guanyltransfera...   191   7e-49

>Os03g0208900 Similar to ADP-glucose pyrophosphorylase (Fragment)
          Length = 415

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/415 (97%), Positives = 405/415 (97%)

Query: 1   MAASEQRVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVHHPISACRRIPNLAQIY 60
           MAASEQRVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVHHPISACRRIPNLAQIY
Sbjct: 1   MAASEQRVVAVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVHHPISACRRIPNLAQIY 60

Query: 61  LVGFYEEREFALYVSSISNELRVPVRYLREDKPHGSAGGLYSFRDYIMEDSPSHIVLLNC 120
           LVGFYEEREFALYVSSISNELRVPVRYLREDKPHGSAGGLYSFRDYIMEDSPSHIVLLNC
Sbjct: 61  LVGFYEEREFALYVSSISNELRVPVRYLREDKPHGSAGGLYSFRDYIMEDSPSHIVLLNC 120

Query: 121 DVCSSFPLPDMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETFV 180
           DVCSSFPLPDMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETFV
Sbjct: 121 DVCSSFPLPDMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETFV 180

Query: 181 SDLINCGVYIFTPNIFNAIEDVLKQKKDRANLRRVSSFEALHSATKALPADYVRLDQDIL 240
           SDLINCGVYIFTPNIFNAIEDVLKQKKDRANLRRVSSFEALHSATKALPADYVRLDQDIL
Sbjct: 181 SDLINCGVYIFTPNIFNAIEDVLKQKKDRANLRRVSSFEALHSATKALPADYVRLDQDIL 240

Query: 241 SPLAGKKELYTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGD 300
           SPLAGKKELYTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGD
Sbjct: 241 SPLAGKKELYTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGD 300

Query: 301 VYIHPSAKVHPTAKIGPNVSISANARIGAGARLIHCIILDDVEIMENAVVIHSIVGWKST 360
           VYIHPSAKVHPTAKIGPNVSISANARIGAGARLIHCIILDDVEIMENAVVIHSIVGWKST
Sbjct: 301 VYIHPSAKVHPTAKIGPNVSISANARIGAGARLIHCIILDDVEIMENAVVIHSIVGWKST 360

Query: 361 VGKWSRVQGEGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTLNVSVQEEIIL 415
           VGKWSRVQGEGDHNAKLGITILGEA          NSIVLPNKTLNVSVQEEIIL
Sbjct: 361 VGKWSRVQGEGDHNAKLGITILGEAVDVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415



>Os03g0268400 Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
           (ATP-mannose-1- phosphate guanylyltransferase)
           (GDP-mannose pyrophosphorylase) (NDP- hexose
           pyrophosphorylase)
          Length = 361

 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 203/407 (49%), Gaps = 49/407 (12%)

Query: 10  AVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVHHPISACRRIPNLAQIYLVGFYEERE 69
           A+I+VGG   GTR RPL+L+VPKPL     +PM+ H I A + +  + ++ L   Y+   
Sbjct: 3   ALILVGG--FGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEV-GVTEVVLAINYQPEV 59

Query: 70  FALYVSSISNELRVPVRYLREDKPHGSAGGLYSFRDYIMEDSPSHIVLLNCDVCSSFPLP 129
              ++    ++L + +   +E +P G+AG L   RD + + S     +LN DV S +P  
Sbjct: 60  MLNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFA 119

Query: 130 DMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETFVSDLINCGVY 189
           ++++ HK +GG  T++V KV   S  ++G +V + ET+++  + EKP+ FV + IN G+Y
Sbjct: 120 ELIQFHKSHGGEATIMVTKVDEPS--KYGVVVMEDETDKVERFVEKPKVFVGNKINAGIY 177

Query: 190 IFTPNIFNAIEDVLKQKKDRANLRRVSSFEALHSATKALPADYVRLDQDILSPLAGKKEL 249
           +  P++            DR  L+  S                  +++++   +A    L
Sbjct: 178 LLNPSVL-----------DRIELKPTS------------------IEKEVFPRIAADNGL 208

Query: 250 YTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGDVYIHPSAKV 309
           +      FW  I  P   +    LYL   R  +P  LASG     A ++G+V +H +A +
Sbjct: 209 FAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKAPAKLASG-----AHVLGNVLVHETAVI 263

Query: 310 HPTAKIGPNVSISANARIGAGARLIHCIILDDVEIMENAVVIHSIVGWKSTVGKWSRVQG 369
                IGP+V++     + AG RL  C ++    + ++A +  SI+GW STVG W+RV+ 
Sbjct: 264 GEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKKHACISSSIIGWHSTVGMWARVE- 322

Query: 370 EGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTLNVSV-QEEIIL 415
                    +TILGE             +VLP+K +  S+ + EI++
Sbjct: 323 --------NMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM 361



>Os01g0847200 Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
           (ATP-mannose-1- phosphate guanylyltransferase)
           (GDP-mannose pyrophosphorylase) (NDP- hexose
           pyrophosphorylase)
          Length = 361

 Score =  191 bits (486), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 204/407 (50%), Gaps = 49/407 (12%)

Query: 10  AVIMVGGPTKGTRFRPLSLNVPKPLFPLAGQPMVHHPISACRRIPNLAQIYLVGFYEERE 69
           A+I+VGG   GTR RPL+L+ PKPL   A +PM+ H I A + +  + ++ L   Y    
Sbjct: 3   ALILVGG--FGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEV-GVTEVVLAINYRPEV 59

Query: 70  FALYVSSISNELRVPVRYLREDKPHGSAGGLYSFRDYIMEDSPSHIVLLNCDVCSSFPLP 129
              ++    ++L + +   +E +P G+AG L   RD +++ S     +LN DV S +P  
Sbjct: 60  MLNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFA 119

Query: 130 DMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETFVSDLINCGVY 189
           ++++ HK +GG  T++V KV   S  ++G +V +  T  +  + EKP+ FV + IN G+Y
Sbjct: 120 ELIKFHKSHGGEATIMVTKVDEPS--KYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIY 177

Query: 190 IFTPNIFNAIEDVLKQKKDRANLRRVSSFEALHSATKALPADYVRLDQDILSPLAGKKEL 249
           +  P++            DR  L+  S                  +++++   +A   +L
Sbjct: 178 LLNPSVL-----------DRIELKPTS------------------IEKEVFPRIASDAKL 208

Query: 250 YTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGDVYIHPSAKV 309
           +      FW  +  P   +    LYL   R  S + LA+G     A I+G+V +H SAK+
Sbjct: 209 FALVLPGFWMDVGQPRDYITGLRLYLDSLRKRSTNRLATG-----AHIVGNVLVHESAKI 263

Query: 310 HPTAKIGPNVSISANARIGAGARLIHCIILDDVEIMENAVVIHSIVGWKSTVGKWSRVQG 369
                IGP+V+I     +  G RL  C ++  V I ++A + +SI+GW STVG+W+R++ 
Sbjct: 264 GEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIKKHACISNSIIGWHSTVGQWARIE- 322

Query: 370 EGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTLNVSV-QEEIIL 415
                    +TILGE             +VLP+K +  S+ + EI++
Sbjct: 323 --------NMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEIVM 361



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,094,076
Number of extensions: 609963
Number of successful extensions: 1200
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)