BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0241100 Os03g0241100|AK103029
(719 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0241100 Myb, DNA-binding domain containing protein 1407 0.0
Os03g0773100 Similar to Myb/SANT domain protein 210 2e-54
Os01g0182400 Conserved hypothetical protein 171 1e-42
Os07g0634100 Conserved hypothetical protein 153 5e-37
>Os03g0241100 Myb, DNA-binding domain containing protein
Length = 719
Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/719 (95%), Positives = 684/719 (95%)
Query: 1 MSLVRSAPARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRM 60
MSLVRSAPARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRM
Sbjct: 1 MSLVRSAPARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRM 60
Query: 61 KKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKD 120
KKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKD
Sbjct: 61 KKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKD 120
Query: 121 RNKTRKKCPRGDVCLSSSSSAVNRTPGNESFSVKLLAVDVSNXXXXXXXXXXXXXXXTEP 180
RNKTRKKCPRGDVCLSSSSSAVNRTPGNESFSVKLLAVDVSN TEP
Sbjct: 121 RNKTRKKCPRGDVCLSSSSSAVNRTPGNESFSVKLLAVDVSNGSKVGSSKGSFFKKVTEP 180
Query: 181 NCSNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWERAAMAGVSLVADAAEELERNTV 240
NCSNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWERAAMAGVSLVADAAEELERNTV
Sbjct: 181 NCSNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWERAAMAGVSLVADAAEELERNTV 240
Query: 241 NADARMLSPSSSNACTVDGLGTNHIKEADQQAPAKLKLQLFPINEATRKALEKDEHNPHL 300
NADARMLSPSSSNACTVDGLGTNHIKEADQQAPAKLKLQLFPINEATRKALEKDEHNPHL
Sbjct: 241 NADARMLSPSSSNACTVDGLGTNHIKEADQQAPAKLKLQLFPINEATRKALEKDEHNPHL 300
Query: 301 ELTLSARKKISSVLEHLNRKWGNSNIASGELLLFPYCAHQEDLATYQRWTTKDTVAVADV 360
ELTLSARKKISSVLEHLNRKWGNSNIASGELLLFPYCAHQEDLATYQRWTTKDTVAVADV
Sbjct: 301 ELTLSARKKISSVLEHLNRKWGNSNIASGELLLFPYCAHQEDLATYQRWTTKDTVAVADV 360
Query: 361 FLSVNSPSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSPLEACVQKDGNSL 420
FLSVNSPSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSPLEACVQKDGNSL
Sbjct: 361 FLSVNSPSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSPLEACVQKDGNSL 420
Query: 421 SSCAPEQHPCGSKDQSALLFAMPSSTGKSAQVPEQCIDVLPSQFGRQNQDQVTTNQVFEV 480
SSCAPEQHPCGSKDQSALLFAMPSSTGKSAQVPEQCIDVLPSQFGRQNQDQVTTNQVFEV
Sbjct: 421 SSCAPEQHPCGSKDQSALLFAMPSSTGKSAQVPEQCIDVLPSQFGRQNQDQVTTNQVFEV 480
Query: 481 DQGMDCAAVSEGEWADTLTDISVGYLLTEASRGANTDCPGTSVVKNTLLLENPCSYDSFD 540
DQGMDCAAVSEGEWADTLTDISVGYLLTEASRGANTDCPGTSVVKNTLLLENPCSYDSFD
Sbjct: 481 DQGMDCAAVSEGEWADTLTDISVGYLLTEASRGANTDCPGTSVVKNTLLLENPCSYDSFD 540
Query: 541 AAVALHASRYKSAEQPALASHSTIWGAEETCDAFSFNLPASRKREGXXXXXXXXXXXXXX 600
AAVALHASRYKSAEQPALASHSTIWGAEETCDAFSFNLPASRKREG
Sbjct: 541 AAVALHASRYKSAEQPALASHSTIWGAEETCDAFSFNLPASRKREGSNNSASSSPDSDSD 600
Query: 601 XXXXXXEGFQCFLQDLAGAAVAHNPCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYW 660
EGFQCFLQDLAGAAVAHNPCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYW
Sbjct: 601 VHPSNSEGFQCFLQDLAGAAVAHNPCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYW 660
Query: 661 PDSLGPLDLDIPSATYHADDLLLGDSQNSWNRMMANSLDAFRNLSFFTADKNDSIPSIM 719
PDSLGPLDLDIPSATYHADDLLLGDSQNSWNRMMANSLDAFRNLSFFTADKNDSIPSIM
Sbjct: 661 PDSLGPLDLDIPSATYHADDLLLGDSQNSWNRMMANSLDAFRNLSFFTADKNDSIPSIM 719
>Os03g0773100 Similar to Myb/SANT domain protein
Length = 157
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/106 (93%), Positives = 102/106 (96%)
Query: 8 PARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRMKKLLGPE 67
P RQWAAWTRQEEQ+FFNALR GKNFEKITLRVQSK+KDQVRHYYYRLVRRMKKLLGPE
Sbjct: 12 PTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPE 71
Query: 68 FSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEAL 113
FSLDAKNSKDT+AAML WWSLLEKFSCSASKLHLKPRRFKTFVEAL
Sbjct: 72 FSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEAL 117
>Os01g0182400 Conserved hypothetical protein
Length = 467
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 166/317 (52%), Gaps = 54/317 (17%)
Query: 274 AKLKLQLFPINEATRKALEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLL 333
K+ LQLFPI+E +K+L++ HNP+LELT++ RKKISSVL+HLN KWGNS A GEL+L
Sbjct: 87 GKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELML 146
Query: 334 FPYCAHQEDLATYQRWTTKDTVAVADVFLSVNSPSVFRLRYGWF--SLAELEAGVSEISL 391
FP +++ +RWT D+ ADV ++V SPS FRLRYGWF + E +GVS + L
Sbjct: 147 FPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVS-LGL 205
Query: 392 THFENCLIPEDIHAKSPLEACV--QKDGNSLSSCAPEQHPCGSKDQSALLFAMPSSTGKS 449
H +I + PL+ V QK +LS + P FA PS+ +
Sbjct: 206 VHSAGNIIDNE-----PLDPVVREQKQMTALS-----EFPSN--------FAAPSTEANT 247
Query: 450 AQVPEQCIDVLPSQFGRQNQDQVTTNQVFEVDQGMDCAAVSEGEWADTLTDISVGYLLTE 509
+ +Q NQ + T W D +++IS G LL E
Sbjct: 248 VKTMKQ-----------DNQSKETPL-----------------SWIDCISNISFGALLAE 279
Query: 510 ASRGANTDCPGTSVVKNTLLLENPCSYDSFDAAVALHASRYKSAEQPALASHSTIWGAEE 569
A+ + D N+ L + P + DSFDAA+A +R +++ QP +++ S +W AEE
Sbjct: 280 AA--PSQDSKQLLPQNNSSLQQIPLTADSFDAAIASLIARQQASSQPKVSTPS-LWDAEE 336
Query: 570 TCDAFSFNLPASRKREG 586
TC AF SR+ G
Sbjct: 337 TCHAFPSQNRISRRTPG 353
>Os07g0634100 Conserved hypothetical protein
Length = 388
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 157/313 (50%), Gaps = 48/313 (15%)
Query: 274 AKLKLQLFPINEATRKALEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLL 333
K+KL+LFPI++A +K L+++ HNP+LELTL+ RKKISSV++HLN KWGNS A GEL+L
Sbjct: 28 GKIKLELFPIDKAIQKVLQQENHNPYLELTLAPRKKISSVVQHLNIKWGNSQCARGELML 87
Query: 334 FPYCAHQEDLATYQRWTTKDTVAVADVFLSVNSPSVFRLRYGWFSLAELEAGVSEISLTH 393
FPY A +++A +WT D+ ADV +V SP FRLRYGWF + E +H
Sbjct: 88 FPYDAQLDNIAGSGKWTHSDSCTAADVHAAVGSPLRFRLRYGWFE-PDFE------QQSH 140
Query: 394 FENCLIPEDIHAKSPLEACVQKDGNSLSSCAPEQHPCGSKDQSALLFAMPSSTGKSAQVP 453
N +D+H+ + D L EQ Q+ L P+
Sbjct: 141 GPNL---QDVHSVDKI-----IDNKPLDPVLMEQ------KQTVHLSEFPND-------- 178
Query: 454 EQCIDVLPSQFGRQNQDQVTTNQVFEVDQGMDCAAVSEGEWADTLTDISVGYLLTEASRG 513
+Q N Q NQ + V+ W D +++IS LL+EA+
Sbjct: 179 ------FAAQSVGDNAVQTVGNQ----------SKVTPLSWIDCISNISFEELLSEAAPS 222
Query: 514 ANTDCPGTSVVKNTLLLENPCSYDSFDAAVALHASRYKSAEQPALASHSTIWGAEETCDA 573
A D NT + P ++DSFDAA+A + +++ Q + S+ ++W AEE C A
Sbjct: 223 A--DNKQLLSQNNTSFSQIPINFDSFDAAIASVIGQQQASNQMKV-SNPSLWDAEEACHA 279
Query: 574 FSFNLPASRKREG 586
F S + G
Sbjct: 280 FPLQSQTSIRTFG 292
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,060,423
Number of extensions: 904808
Number of successful extensions: 2278
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2274
Number of HSP's successfully gapped: 4
Length of query: 719
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 611
Effective length of database: 11,396,689
Effective search space: 6963376979
Effective search space used: 6963376979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)