Os03g0241100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os03g0241100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.81 | 0.187 | 11.3 | -0.273 | 0.735 | -0.396 | 0.279 | -1.24 | 0.0815 | 4.21 | 24.17 | 20 | -- | -- |
| 17.96 | 0.199 | 11.3 | -0.44 | 0.744 | -0.276 | -0.0721 | -- | 0.0344 | 4.23 | 25.79 | 31 | -- | -- |
| 15.96 | 0.188 | 11.3 | -0.293 | 0.734 | -0.38 | -- | -1.11 | 0.0772 | 4.2 | 24.12 | 20 | -- | -- |
| 17.96 | 0.199 | 11.3 | -0.44 | 0.746 | -0.277 | -- | -- | 0.0341 | 4.24 | 26 | 10 | -- | -- |
| 43.56 | 0.309 | 11.3 | -0.228 | -- | -0.0593 | -- | -0.872 | 0.139 | -- | 24.1 | 17 | -- | -- |
| 19.11 | 0.205 | 11.3 | -0.376 | 0.694 | -- | -0.0604 | -- | 0.0933 | 4.46 | -- | -- | -- | -- |
| 19.12 | 0.205 | 11.3 | -0.375 | 0.694 | -- | -- | -- | 0.0936 | 4.47 | -- | -- | -- | -- |
| 39.41 | 0.292 | 11.3 | -0.226 | -- | 0.611 | -- | -- | 0.193 | -- | 36.78 | 194 | -- | -- |
| 22.61 | 0.223 | 11.3 | -- | 0.706 | -0.114 | -- | -- | 0.114 | 4.38 | 25.79 | 5 | -- | -- |
| 44.88 | 0.313 | 11.3 | -0.348 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 22.83 | 0.224 | 11.3 | -- | 0.687 | -- | -- | -- | 0.135 | 4.48 | -- | -- | -- | -- |
| 40.66 | 0.297 | 11.3 | -- | -- | 0.686 | -- | -- | 0.226 | -- | 50.2 | 202 | -- | -- |
| 48.07 | 0.324 | 11.3 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.40 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 4 | 15.46 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 10 | 15.53 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 81 | 15.71 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 116 | 15.75 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 149 | 15.86 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 153 | 15.86 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 154 | 15.86 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 155 | 15.87 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 156 | 15.87 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 157 | 15.87 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 161 | 15.87 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 165 | 15.88 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 166 | 15.88 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 168 | 15.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 177 | 15.91 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 178 | 15.91 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 182 | 15.91 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 188 | 15.91 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 194 | 15.91 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 207 | 15.92 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 212 | 15.93 | temperature | 25.0 | 720 | < th | dose independent | sin | 16 | NA |
| 213 | 15.93 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 214 | 15.93 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 14 |
| 238 | 15.96 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 11 |
| 253 | 15.97 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 3 |
| 273 | 15.98 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 275 | 15.98 | temperature | 25.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 296 | 16.01 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 305 | 16.02 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 315 | 16.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 348 | 16.06 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 349 | 16.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 372 | 16.08 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 374 | 16.08 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 501 | 16.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 509 | 16.15 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 523 | 16.15 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 562 | 16.17 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 671 | 16.21 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 689 | 16.22 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 828 | 16.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 833 | 16.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 860 | 16.29 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 934 | 16.32 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 960 | 16.33 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |