BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0241100 Os03g0241100|AK103029
(719 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36960.3 | chr2:15523552-15527245 FORWARD LENGTH=745 490 e-138
AT4G39380.2 | chr4:18309628-18311874 REVERSE LENGTH=535 119 6e-27
>AT2G36960.3 | chr2:15523552-15527245 FORWARD LENGTH=745
Length = 744
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 324/746 (43%), Positives = 414/746 (55%), Gaps = 104/746 (13%)
Query: 8 PARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRMKKLLGPE 67
P RQWAAWT QEE++FF ALRQVGKNFEKIT RVQSK+KDQVRHYYYRLVRRM KLLGP+
Sbjct: 51 PTRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPD 110
Query: 68 FSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKDRNKT-RK 126
SLDAKN KDT AAML WWSLLEK+SC ASKLHLKPRRFK F+EAL +QLLKDR K+ RK
Sbjct: 111 LSLDAKNPKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKLFIEALEHQLLKDRRKSIRK 170
Query: 127 KCPRGDVCLSSSS----SAVNRTPGNESFSVKLLAVDVSNXXXXXXXXXXXXXXXTEPNC 182
+ +G+ LSS+S S+ +R G ++ KL+ D N +
Sbjct: 171 RTCQGE-NLSSASLGNISSHSRERGLDNRPFKLILSDGQNVKKLGPGRASTKHGES---L 226
Query: 183 SNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWERAAMAGVSLVADAAEELERNTVNA 242
S G K D + R +Q+R+ G Y+KWE+AA+ GVSLVADAAE LER +++
Sbjct: 227 SVNLGDEKEDTAFGRGGRQRRKQAG------YRKWEKAAIDGVSLVADAAEHLERTSIDK 280
Query: 243 D---------ARMLSPSSS-NACTVDGLGTNHIKEADQQAPAKLKLQLFPINEATRKALE 292
D R L+ S + C+ G + +A+ Q AKLKLQLFPI+E TR++LE
Sbjct: 281 DMDDQTDLGPTRYLTGKSPLSLCSA---GDVPLSDANMQFSAKLKLQLFPIDECTRRSLE 337
Query: 293 KDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLLFPYCAHQEDLATYQRWTTK 352
D+HNPHLELTLS RKKISSVLEHLNRKWG+S+ A+GELLLFPY A +E + +QRWT
Sbjct: 338 MDKHNPHLELTLSNRKKISSVLEHLNRKWGSSSCATGELLLFPYNARKETVTCHQRWTHD 397
Query: 353 DTVAVADVFLSVNSPSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSPLEAC 412
++ A+V V SPSVFRLRYGWF
Sbjct: 398 SFLSAAEVHSMVGSPSVFRLRYGWF----------------------------------- 422
Query: 413 VQKDGNSLSSCAPEQHPCGSKDQSA-----------LLFAMPSSTGKSAQVPEQCIDVLP 461
V S+ S P PC S + L + P S +A EQ V P
Sbjct: 423 VHDASGSIISQVPTSDPCPSLEDDMNVDRLNEVNMLLTESGPLSVHSTA---EQTTSVEP 479
Query: 462 SQF-----------GRQNQD-QVTTNQVFEVDQGMDCAAVSEGEWADTLTDISVGYLLTE 509
SQ R D + + + ++ A S GEWAD+LT+IS+G LL+E
Sbjct: 480 SQGLVCASGVHDRPARSRDDYEPASTSITPLEHLSGGNAQSPGEWADSLTNISIGDLLSE 539
Query: 510 ASRGANTDC--PGTSVVKNTLLLENPCSYDSFDAAVALHASRYK---SAEQPALASHSTI 564
++D P + + LL + P + DSFDAA+A H R++ SA+ P + S++
Sbjct: 540 VPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFDAAIAAHILRHQNKPSAQLPLTSGSSSL 599
Query: 565 WGAEETCDAFSFNLPASRKREGXXXXXXXXXXXXXXXXXXXXEGFQCFLQDLAGAAVAHN 624
W EET DAFSF +K E Q ++ +G ++N
Sbjct: 600 WDDEETRDAFSF-----QKNRFANSTELASVASPKGVGRVNGEPSQ-LVEASSGDEGSYN 653
Query: 625 PCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYWPDSLGPLDLDIPSATYHADDLLLG 684
P DD +E A+ P + LAD+YWPDSLGPLDLDI S+ Y DDL+L
Sbjct: 654 PH-DDGDPMEEGPAD--PHTMDSPGKTPCGLADVYWPDSLGPLDLDIRSSKY-TDDLILS 709
Query: 685 DSQNSWNRMMANSLDAFRNLSFFTAD 710
+S +R++A SLDAF+N S F D
Sbjct: 710 ESLGGLSRLIATSLDAFQNCSLFGFD 735
>AT4G39380.2 | chr4:18309628-18311874 REVERSE LENGTH=535
Length = 534
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 158/361 (43%), Gaps = 77/361 (21%)
Query: 274 AKLKLQLFPINEATRKALEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLL 333
K+KLQLFP++ TR+ LEKD +P+LELTLS+RKKISSVL+ ++ KWG+S IA G+ L
Sbjct: 89 GKMKLQLFPLDAHTREGLEKDGFHPYLELTLSSRKKISSVLQRIHSKWGSSEIARGDPTL 148
Query: 334 FPYCAHQEDLATYQRWTTKDTVAVADVFLSVNSPSVFRLRYGWFSLAELEAGV------- 386
+PY LA+ +W + +V+ ++ +P +FRLRYGW S E +
Sbjct: 149 YPYDTSV--LASGHKWVANSNITTGNVYEAIGAPFIFRLRYGWSSATENKTNEPPSPSTP 206
Query: 387 -SEISLTHFENCLI----PEDIHAKSPLEACVQKDGNSLSSCAPEQHPCGSKDQSALLFA 441
+ + EN L P + PLE + DG S+ ++ LLF
Sbjct: 207 GTGTQMLGSENPLTMLSSPNQVTDTPPLEN-LPHDGQVEST----ENKINDGSGPTLLFW 261
Query: 442 MPSSTGKSAQVPEQCIDV-LPSQFGRQNQDQVTTNQVFEVDQGMDCAAVSEGEWADTLTD 500
T S + +V L FG N + G A + W D LT+
Sbjct: 262 DDGLT--SLSIGGLLSEVSLKGNFG---------NHCKNSNAGNANATL----WEDNLTN 306
Query: 501 ISVGYLLTEAS---------------RGANTDCPGTSVVKNTLLLEN------------- 532
IS+G L +EAS G + G + + ++L E
Sbjct: 307 ISIGGLFSEASLQDRWHMNNEREPAHNGQSIGSIGGLLSEASILGEGRISDCNKTWETRR 366
Query: 533 -------PCSYDSFDAAVALHASRYKSAEQPAL--ASHSTIWGAEETCDAFSFNLPASRK 583
P DS DA + ++ L +SHS+I AE+TC AFSF RK
Sbjct: 367 AIKQPPLPLISDSLDAFLVNQTDNRRAPCHAPLPESSHSSILDAEDTCHAFSF-----RK 421
Query: 584 R 584
R
Sbjct: 422 R 422
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,805,432
Number of extensions: 589693
Number of successful extensions: 1565
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 4
Length of query: 719
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 613
Effective length of database: 8,200,473
Effective search space: 5026889949
Effective search space used: 5026889949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)