BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0225900 Os03g0225900|AK066138
(478 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0225900 Allene oxide synthase 810 0.0
Os03g0767000 Similar to Allene oxide synthase (EC 4.2.1.92) 417 e-117
Os02g0218800 Similar to Allene oxide synthase (EC 4.2.1.92) 365 e-101
Os02g0218700 Similar to Allene oxide synthase (EC 4.2.1.92) 212 6e-55
Os02g0110200 Similar to Hydroperoxide lyase 147 1e-35
>Os03g0225900 Allene oxide synthase
Length = 478
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/478 (85%), Positives = 410/478 (85%)
Query: 1 MELGVPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPGP 60
MELGVPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPGP
Sbjct: 1 MELGVPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPGP 60
Query: 61 FMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHA 120
FMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHA
Sbjct: 61 FMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHA 120
Query: 121 KIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEA 180
KIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEA
Sbjct: 121 KIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEA 180
Query: 181 YFGVRPSASSSLGTGGPXXXXXXXXXXXXXXXXXXXPMIIEDXXXXXXXXXXXXISSDXX 240
YFGVRPSASSSLGTGGP PMIIED ISSD
Sbjct: 181 YFGVRPSASSSLGTGGPTKAALWLLWQLAPLTTLGLPMIIEDPLLHTLPLPPFLISSDYK 240
Query: 241 XXXXXXXXXXXXXXXXXXXXGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEK 300
GLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEK
Sbjct: 241 ALYAYFAAAASQALDAAEGLGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEK 300
Query: 301 LHERLAAEIRSAVADAGGNVTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIES 360
LHERLAAEIRSAVADAGGNVTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIES
Sbjct: 301 LHERLAAEIRSAVADAGGNVTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIES 360
Query: 361 HDASFAIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETE 420
HDASFAIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETE
Sbjct: 361 HDASFAIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETE 420
Query: 421 NPSVDNKQCPGKNXXXXXXXXXXXXXXXRYDTFTAEAGKKVVITGVTKASTSAVNRTA 478
NPSVDNKQCPGKN RYDTFTAEAGKKVVITGVTKASTSAVNRTA
Sbjct: 421 NPSVDNKQCPGKNLVVLVGRLLLVELFLRYDTFTAEAGKKVVITGVTKASTSAVNRTA 478
>Os03g0767000 Similar to Allene oxide synthase (EC 4.2.1.92)
Length = 512
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/465 (47%), Positives = 286/465 (61%), Gaps = 4/465 (0%)
Query: 7 LPRRPVPGSYGVPFVSAVRDRLDFYY-LQGQDKYFESRAERYGSTVVRINVPPGPFMARD 65
LP R VPG YG P V A+RDR +++Y G+D +F +R + STVVR+N+PPGPF+ARD
Sbjct: 45 LPLRKVPGDYGPPVVGAIRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLNMPPGPFVARD 104
Query: 66 PRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQL 125
PRVVALLDA SFPVLFD + V+K D+FTGTFMPST LTGGYRV +YLDPSEPNHA +K L
Sbjct: 105 PRVVALLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTL 164
Query: 126 LLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVR 185
L LL R+ +P FR +G L +E+ LA GK+DF NDA +F F+ + G
Sbjct: 165 LFYLLSHRRQQVIPKFREVYGDLFGLMENDLAR-VGKADFGVHNDAAAFGFLCQGLLGRD 223
Query: 186 PSASSSLGTGGPXXXXXXXXXXXXXXXXXXXPMIIEDXXXXXXXXXXXXISSDXXXXXXX 245
P A S+LG GP P ++ED + D
Sbjct: 224 P-AKSALGRDGPKLITKWVLFQLSPLLSLGLPTLVEDTLLHSLRLPPALVKKDYDRLADF 282
Query: 246 XXXXXXXXXXXXXXXGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERL 305
G++REEA HN+LFA FNS+GG K+L P ++ + +AG ++H RL
Sbjct: 283 FRDAAKAVVDEGERLGIAREEAVHNILFALCFNSFGGMKILFPTLVKWLGRAGARVHGRL 342
Query: 306 AAEIRSAVADAGGNVTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIESHDASF 365
A E+R AV D GG VT+ AL +M L +S V+EALR++PPV QYGRAK D+ +ESHD +
Sbjct: 343 ATEVRGAVRDNGGEVTMKALAEMPLVKSAVYEALRIEPPVAMQYGRAKRDMVVESHDYGY 402
Query: 366 AIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVD 425
+++GEMLFGYQP AT+DPRVF A E+V DRF+GE+G +LL++V WSNG ET P++
Sbjct: 403 EVREGEMLFGYQPMATKDPRVF-ARPEEYVPDRFLGEDGARLLRHVVWSNGPETAAPTLH 461
Query: 426 NKQCPGKNXXXXXXXXXXXXXXXRYDTFTAEAGKKVVITGVTKAS 470
+KQC GK+ RYD+F E G + + VT S
Sbjct: 462 DKQCAGKDFVVLVARLLLVELFLRYDSFDVEVGTSTLGSSVTVTS 506
>Os02g0218800 Similar to Allene oxide synthase (EC 4.2.1.92)
Length = 510
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/473 (43%), Positives = 281/473 (59%), Gaps = 14/473 (2%)
Query: 10 RPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYG-STVVRINVPPGPFMARDPRV 68
R +PG YGVPF+S +RDRLD+YY QG D++F SR R+G +TV+R+N+PPGPF+A DPRV
Sbjct: 30 REIPGGYGVPFLSPLRDRLDYYYFQGADEFFRSRVARHGGATVLRVNMPPGPFLAGDPRV 89
Query: 69 VALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLS 128
VALLDA+SF VL D + V+K D GTFMPS +L GG+R A+LD ++P HAKIK++++S
Sbjct: 90 VALLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMS 149
Query: 129 LLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSA 188
L +R P FR+ F A+ D V++ L +GG +F LN +F A FG P +
Sbjct: 150 LAAARMHHVAPAFRAAFAAMFDEVDAGLVAGG-PVEFNKLNMRYMLDFTCAALFGGAPPS 208
Query: 189 SSSLGTGGPXXXXXXXXXXXXXXXXXXXPMIIEDXXXXXXXXXXXXISSDXXXXXX--XX 246
+ P +ED + +
Sbjct: 209 KAMGDAAVTKAVKWLIFQLHPLASKVVKPWPLEDLLLHTFRLPPFLVRREYGEITAYFAA 268
Query: 247 XXXXXXXXXXXXXXGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLA 306
G+ R+E HNL+F VFN+YGGFK+ LP I+ +A+AG +LH +LA
Sbjct: 269 AAAAILDDAEKNHPGIPRDELLHNLVFVAVFNAYGGFKIFLPHIVKWLARAGPELHAKLA 328
Query: 307 AEIRSAVADAGGNVTLAALEK-MELTRSVVWEALRLDPPVRFQYGRAKADLEIESHDASF 365
+E+R+A GG +T++A+EK M L +SVVWEALR++PPV FQYGRA+ D+ +ESHDA++
Sbjct: 329 SEVRAAAPAGGGEITISAVEKEMPLVKSVVWEALRMNPPVEFQYGRARRDMVVESHDAAY 388
Query: 366 AIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFV---GEEGRKLLQYVYWSNGRETENP 422
++KGE+LFGYQP ATRD +VF A EFV DRFV G R LL++V WSNG ET P
Sbjct: 389 EVRKGELLFGYQPLATRDEKVFD-RAGEFVPDRFVSGAGSAARPLLEHVVWSNGPETGTP 447
Query: 423 SVDNKQCPGKNXXXXXXXXXXXXXXXRYDTFTAEAGK-----KVVITGVTKAS 470
S NKQCPGK+ RYDTF A+ + V T +T+A+
Sbjct: 448 SEGNKQCPGKDMVVAVGRLMVAGLFRRYDTFAADVEELPLEPVVTFTSLTRAA 500
>Os02g0218700 Similar to Allene oxide synthase (EC 4.2.1.92)
Length = 500
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 146/220 (66%), Gaps = 10/220 (4%)
Query: 261 GLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLAAEIRSAVADAGGN- 319
G+ R+E NL+F +FN++GGFK+ LP I+ +A+AG +LH +LA E+R+ V +
Sbjct: 281 GIPRDELLDNLVFVAIFNAFGGFKIFLPHIVKWLARAGPELHAKLATEVRATVPTGEDDG 340
Query: 320 VTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIESHDASFAIKKGEMLFGYQPC 379
+TLAA+E+M L +SVVWEALR++PPV FQYG A+ D+ +ESHDA++ ++KGEMLFGYQP
Sbjct: 341 ITLAAVERMPLVKSVVWEALRMNPPVEFQYGHARRDMVVESHDAAYEVRKGEMLFGYQPL 400
Query: 380 ATRDPRVFGATAREFVGDRFV--GEEG-RKLLQYVYWSNGRETENPSVDNKQCPGKNXXX 436
ATRD +VF A EFV DRFV G G R LL++V WSNG ET PS NKQCPGK+
Sbjct: 401 ATRDEKVFD-RAGEFVADRFVAGGAAGDRPLLEHVVWSNGPETRAPSEGNKQCPGKDMVV 459
Query: 437 XXXXXXXXXXXXRYDTFTAE-----AGKKVVITGVTKAST 471
RYDTF A+ V T +T+AS+
Sbjct: 460 AVGRLMVAELFRRYDTFAADVVEAPVEPVVTFTSLTRASS 499
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 127/190 (66%), Gaps = 5/190 (2%)
Query: 7 LPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYG-STVVRINVPPGPFMARD 65
LP R +PG YGVPF S +RDRLD++Y QG ++YF SR R+G +TV+R+N+PPGPF++ +
Sbjct: 27 LPIREIPGGYGVPFFSPLRDRLDYFYFQGAEEYFRSRVARHGGATVLRVNMPPGPFISGN 86
Query: 66 PRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQL 125
PRVVALLDA+SF VL D + V+K D GT+MPS +L GG+R A+LD ++P HAKIK++
Sbjct: 87 PRVVALLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRV 146
Query: 126 LLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVR 185
++SL +R P FR+ F A+ D VE+ L G +F LN +F A FG
Sbjct: 147 VMSLAAARMHHVAPAFRAAFAAMFDAVEAGL---GAAVEFNKLNMRYMLDFTCAALFGGE 203
Query: 186 PSASSSLGTG 195
P S +G G
Sbjct: 204 PP-SKVVGDG 212
>Os02g0110200 Similar to Hydroperoxide lyase
Length = 487
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 110/199 (55%), Gaps = 4/199 (2%)
Query: 261 GLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLAAEIRSAVADAGGNV 320
G+S+EEA +N+LF FN++GGF + LP ++ V + G R E V G
Sbjct: 275 GISKEEAINNILFVLGFNAFGGFSVFLPFLVMEVGKPGRDDLRRRLREEVRRVLGGGDGG 334
Query: 321 TLAA--LEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIESHD-ASFAIKKGEMLFGYQ 377
+ +M L RS V+E LR+ PPV Q+GRA+ D + SH A++ + KGE+L GYQ
Sbjct: 335 EAGFAAVREMALVRSTVYEVLRMQPPVPLQFGRARRDFVLRSHGGAAYEVGKGELLCGYQ 394
Query: 378 PCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVDNKQCPGKNXXXX 437
P A RDP VF EFV +RF+G++G LLQYVYWSNG ET PS NKQC K
Sbjct: 395 PLAMRDPAVFD-RPEEFVPERFLGDDGEALLQYVYWSNGPETGEPSPGNKQCAAKEVVVA 453
Query: 438 XXXXXXXXXXXRYDTFTAE 456
RYD F +
Sbjct: 454 TACMLVAELFRRYDDFECD 472
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 102/186 (54%), Gaps = 6/186 (3%)
Query: 10 RPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPG-PF-MARDPR 67
RP+PGSYG P + +RDRLD+++ QG D +F RA + STV R N+PP PF + DPR
Sbjct: 16 RPIPGSYGPPLLGPLRDRLDYFWFQGPDDFFRRRAADHKSTVFRANIPPTFPFFLGVDPR 75
Query: 68 VVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLL 127
VVA++DA +F LFD A V+KRDV G ++PS + T G RV YLD +P+HA+ K +
Sbjct: 76 VVAVVDAAAFTALFDPALVDKRDVLIGPYVPSLAFTRGTRVGVYLDTQDPDHARTKAFSI 135
Query: 128 SLLVSRKDAFVPVFRSNFGALLDTVESQL----ASGGGKSDFTALNDATSFEFIGEAYFG 183
LL + R+ +L VE L + + F F+ +A G
Sbjct: 136 DLLRRAARNWAAELRAAVDDMLAAVEEDLNRAPDPAAASASYLIPLQKCIFRFLCKALVG 195
Query: 184 VRPSAS 189
P+A
Sbjct: 196 ADPAAD 201
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,956,749
Number of extensions: 534435
Number of successful extensions: 1303
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 8
Length of query: 478
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 373
Effective length of database: 11,553,331
Effective search space: 4309392463
Effective search space used: 4309392463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)