Os03g0225900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Allene oxide synthase.
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Os03g0225900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Allene oxide synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 684.58 | 1.23 | 4.8 | -1.46 | 2.03 | 5.37 | -0.0611 | 11.9 | 0.44 | 3.61 | 1 | 1496 | 17.4 | -- |
| 695.59 | 1.23 | 4.66 | -0.75 | 1.94 | 3.18 | 0.134 | -- | 0.721 | 3.46 | 3.66 | 1603 | 18 | -- |
| 684.43 | 1.22 | 4.8 | -1.44 | 2.01 | 5.43 | -- | 12 | 0.444 | 3.58 | 0.9973 | 1496 | 17.6 | -- |
| 689.62 | 1.22 | 4.77 | -0.372 | 1.6 | 3.76 | -- | -- | 0.642 | 2.58 | 2.09 | 1639 | 19.4 | -- |
| 793.18 | 1.31 | 4.78 | -1.19 | -- | 5.71 | -- | 10.9 | 0.421 | -- | 1.04 | 1738 | 19.6 | -- |
| 930.93 | 1.43 | 4.73 | -1.03 | 1.96 | -- | -0.416 | -- | 0.212 | 3.26 | -- | -- | -- | -- |
| 931.49 | 1.43 | 4.73 | -1.02 | 1.96 | -- | -- | -- | 0.214 | 3.27 | -- | -- | -- | -- |
| 781.28 | 1.3 | 4.74 | -0.317 | -- | 4.53 | -- | -- | 0.509 | -- | 2.098 | 1647 | 21.7 | -- |
| 692.36 | 1.23 | 4.75 | -- | 1.58 | 3.7 | -- | -- | 0.594 | 2.74 | 2.12 | 1639 | 19.3 | -- |
| 1148.66 | 1.58 | 4.73 | -0.94 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 959.09 | 1.45 | 4.7 | -- | 1.94 | -- | -- | -- | 0.328 | 3.27 | -- | -- | -- | -- |
| 771.59 | 1.29 | 4.59 | -- | -- | 4.92 | -- | -- | 0.891 | -- | 2.1 | 1648 | 21.5 | -- |
| 1171.98 | 1.6 | 4.7 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 628.25 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 2 | 629.82 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 13 | 639.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 17 | 641.38 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 21 | 642.48 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 23 | 642.85 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 33 | 644.18 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 39 | 644.73 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 45 | 644.97 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 47 | 645.04 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 59 | 645.42 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 84 | 646.28 | temperature | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 156 | 648.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 162 | 649.16 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 200 | 650.65 | temperature | 25 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 206 | 650.73 | temperature | 25 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 221 | 651.05 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 237 | 651.25 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 255 | 651.56 | temperature | 25 | 43200 | > th | dose independent | sin | 23 | NA |
| 256 | 651.59 | temperature | 25 | 43200 | < th | dose independent | sin | 22 | NA |
| 327 | 652.75 | temperature | 25 | 43200 | < th | dose dependent | sin | 23 | NA |
| 333 | 652.89 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 422 | 653.96 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 430 | 654.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 553 | 655.49 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 574 | 655.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 597 | 655.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 627 | 656.19 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 635 | 656.26 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 638 | 656.28 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 656 | 656.42 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 704 | 656.75 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 748 | 656.99 | temperature | 20 | 43200 | > th | dose independent | sin | 7 | NA |
| 798 | 657.25 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 832 | 657.40 | temperature | 25 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 896 | 657.72 | temperature | 20 | 43200 | < th | dose independent | sin | 7 | NA |