BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0225900 Os03g0225900|AK066138
         (478 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42650.1  | chr5:17097803-17099359 REVERSE LENGTH=519          432   e-121
AT4G15440.1  | chr4:8835869-8838462 FORWARD LENGTH=385            227   8e-60

>AT5G42650.1 | chr5:17097803-17099359 REVERSE LENGTH=519
          Length = 518

 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/452 (48%), Positives = 290/452 (64%), Gaps = 3/452 (0%)

Query: 7   LPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPGPFMARDP 66
           LP R +PG+YG+P V  ++DR D++Y QG +++F+SR  +Y STV R+N+PPG F+A +P
Sbjct: 52  LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENP 111

Query: 67  RVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLL 126
           +VVALLD KSFPVLFDV KVEK+D+FTGT+MPST LTGGYR+ +YLDPSEP H K+K LL
Sbjct: 112 QVVALLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLL 171

Query: 127 LSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRP 186
             LL S ++   P F++ +  L D++E +L S  GK+DF   +D T+F F+  A++G  P
Sbjct: 172 FFLLKSSRNRIFPEFQATYSELFDSLEKEL-SLKGKADFGGSSDGTAFNFLARAFYGTNP 230

Query: 187 SASSSLGTGGPXXXXXXXXXXXXXXXXXXXPMIIEDXXXXXXXXXXXXISSDXXXXXXXX 246
            A + L    P                   P +IE+            + SD        
Sbjct: 231 -ADTKLKADAPGLITKWVLFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFF 289

Query: 247 XXXXXXXXXXXXXXGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLA 306
                         G+SREEA HNLLFAT FN++GG K+L P ++ R+ +AG ++H RLA
Sbjct: 290 LESAGEILVEADKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLA 349

Query: 307 AEIRSAVADAGGNVTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIESHDASFA 366
            EIRS +   GG +T+ A+EKMELT+SVV+E LR +PPV  QYGRAK DL IESHDA+F 
Sbjct: 350 EEIRSVIKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFK 409

Query: 367 IKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVDN 426
           +K GEML+GYQP ATRDP++F   A EFV +RFVGEEG KLL++V WSNG ETE P+V N
Sbjct: 410 VKAGEMLYGYQPLATRDPKIFD-RADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGN 468

Query: 427 KQCPGKNXXXXXXXXXXXXXXXRYDTFTAEAG 458
           KQC GK+               RYD+F  E G
Sbjct: 469 KQCAGKDFVVLVARLFVIEIFRRYDSFDIEVG 500



>AT4G15440.1 | chr4:8835869-8838462 FORWARD LENGTH=385
          Length = 384

 Score =  227 bits (579), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 181/386 (46%), Gaps = 8/386 (2%)

Query: 86  VEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNF 145
           V+KRDV  G F PS    GG RV  YLD +EP HAKIK   +  L      ++   RSN 
Sbjct: 4   VDKRDVLIGDFRPSLGFYGGVRVGVYLDTTEPKHAKIKGFAMETLKRSSKVWLQELRSNL 63

Query: 146 GALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSASSSLG-TGGPXXXXXXX 204
                T+ES+++  G  S    L     F F+  +  GV  S S  +   G         
Sbjct: 64  NIFWGTIESEISKNGAASYIFPLQRCI-FSFLCASLAGVDASVSPDIAENGWKTINTWLA 122

Query: 205 XXXXXXXXXXXXPMIIEDXXXXXXXXXXXXISSDXXXXXXXXXXXXXXXXXX-XXXXGLS 263
                       P  +E+            I+ +                       GL+
Sbjct: 123 LQVIPTAKLGVVPQPLEEILLHTWPYPSLLIAGNYKKLYNFIDENAGDCLRLGQEEFGLT 182

Query: 264 REEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLAAEIRSAVADAGGNVTLA 323
           R+EA  NLLF   FN+YGGF + LP ++ R+      L ER+  E+R  V  +G ++   
Sbjct: 183 RDEAIQNLLFVLGFNAYGGFSVFLPSLIGRITGDNSGLQERIRTEVRR-VCGSGSDLNFK 241

Query: 324 ALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIESHDASFAIKKGEMLFGYQPCATRD 383
            + +MEL +SVV+E LR  PPV  Q+ RA+ D +I SHDA F +KKGE+L GYQP   RD
Sbjct: 242 TVNEMELVKSVVYETLRFSPPVPLQFARARKDFQISSHDAVFEVKKGELLCGYQPLVMRD 301

Query: 384 PRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVDNKQCPGKNXXXXXXXXXX 443
             VF     EF  DR+VGE G +LL Y+YWSNG +T  PS  NKQC  K+          
Sbjct: 302 ANVFDE-PEEFKPDRYVGETGSELLNYLYWSNGPQTGTPSASNKQCAAKDIVTLTASLLV 360

Query: 444 XXXXXRYDTFTAEAGKKVVITGVTKA 469
                RYDT T ++G    I  V KA
Sbjct: 361 ADLFLRYDTITGDSGS---IKAVVKA 383



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,645,379
Number of extensions: 330679
Number of successful extensions: 751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 3
Length of query: 478
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 376
Effective length of database: 8,310,137
Effective search space: 3124611512
Effective search space used: 3124611512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)