Os02g0110200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroperoxide lyase.
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Os02g0110200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroperoxide lyase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.78 | 0.676 | 9.04 | 0.308 | 2.2 | -0.175 | -0.548 | 8.94 | 0.0651 | 23.9 | 30.07 | 4376 | -- | -- |
| 220.44 | 0.692 | 9.14 | -0.851 | 2.17 | 0.808 | 0.126 | -- | 0.102 | 23.6 | 32.07 | 4204 | -- | -- |
| 208.08 | 0.672 | 9.04 | 0.327 | 2.2 | -0.18 | -- | 8.91 | 0.0644 | 23.9 | 30.03 | 4376 | -- | -- |
| 215.3 | 0.683 | 9.17 | -1.01 | 2.22 | 1.05 | -- | -- | 0.161 | 23.7 | 32 | 4205 | -- | -- |
| 509.81 | 1.05 | 8.99 | 0.284 | -- | 0.00769 | -- | 9.1 | 0.0832 | -- | 30.36 | 4259 | -- | -- |
| 241.65 | 0.729 | 9.24 | -0.991 | 2.26 | -- | -0.443 | -- | -0.117 | 23.9 | -- | -- | -- | -- |
| 242.5 | 0.729 | 9.24 | -0.973 | 2.26 | -- | -- | -- | -0.115 | 23.9 | -- | -- | -- | -- |
| 510.22 | 1.05 | 9.15 | -1.2 | -- | 1.34 | -- | -- | 0.127 | -- | 32.08 | 3952 | -- | -- |
| 250.19 | 0.737 | 9.19 | -- | 2.17 | 0.855 | -- | -- | 0.145 | 23.7 | 32.1 | 4218 | -- | -- |
| 564.58 | 1.11 | 9.19 | -0.904 | -- | -- | -- | -- | -0.0842 | -- | -- | -- | -- | -- |
| 267.45 | 0.765 | 9.22 | -- | 2.25 | -- | -- | -- | -0.00647 | 23.9 | -- | -- | -- | -- |
| 547.15 | 1.09 | 9.12 | -- | -- | 1.11 | -- | -- | 0.217 | -- | 32.09 | 3952 | -- | -- |
| 586.13 | 1.13 | 9.17 | -- | -- | -- | -- | -- | 0.0161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.69 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 17 |
| 4 | 197.36 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 19 |
| 11 | 199.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 13 | 199.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 18 | 199.66 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 20 | 199.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 22 | 199.95 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 21 |
| 23 | 199.97 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 16 |
| 24 | 199.97 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 22 |
| 25 | 199.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 28 | 200.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 31 | 200.43 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 50 | 201.09 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 18 | 19 |
| 64 | 201.41 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 77 | 201.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 119 | 202.63 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 152 | 203.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 9 |
| 182 | 203.85 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 184 | 203.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 186 | 203.91 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 221 | 204.44 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 230 | 204.48 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 233 | 204.52 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 257 | 204.88 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 287 | 205.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 293 | 205.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 303 | 205.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 367 | 205.45 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 374 | 205.53 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 376 | 205.56 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 378 | 205.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 405 | 205.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 408 | 205.82 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 424 | 205.95 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 467 | 206.17 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 582 | 206.48 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 583 | 206.48 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 589 | 206.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 600 | 206.56 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 11 | 15 |
| 602 | 206.57 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 9 |
| 605 | 206.58 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 616 | 206.61 | temperature | 30 | 4320 | > th | dose dependent | sin | 6 | NA |
| 617 | 206.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 623 | 206.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 672 | 206.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 731 | 206.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 784 | 206.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 813 | 207.00 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 816 | 207.02 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 6 |
| 859 | 207.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 873 | 207.08 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 956 | 207.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 977 | 207.10 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 986 | 207.14 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 989 | 207.15 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |