FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0218700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Allene oxide synthase (EC 4.2.1.92).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0357) R2 : 0.113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.905 (0.129) R2dE : 0.122 R2E : 0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0523 (0.0822) R2dN8 : 0.000939 R2N8 : -0.00979
σ : 0.651
deviance : 195.46
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.06
memory length : 14120
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.57 0.638 3.18 0.167 0.188 1.26 -0.842 1.73 0.00173 11.9 1.062 14567 -- --
188.43 0.639 3.12 0.53 0.168 1.17 -1.16 -- 0.096 12.7 1.49 14991 -- --
187.25 0.637 3.18 0.0903 0.235 1.32 -- 2.01 -0.00625 11.4 1.06 14650 -- --
192.27 0.646 3.13 0.45 0.199 1.18 -- -- 0.0746 13 1.48 14991 -- --
190.16 0.642 3.18 0.0497 -- 1.28 -- 2.05 0.012 -- 1.11 14557 -- --
210.96 0.681 3.2 0.168 0.116 -- -0.933 -- -0.208 12.1 -- -- -- --
214.37 0.686 3.2 0.129 0.146 -- -- -- -0.215 9.79 -- -- -- --
191.68 0.645 3.13 0.546 -- 1.13 -- -- 0.131 -- 1.415 16937 -- --
196.11 0.652 3.14 -- 0.187 0.967 -- -- 0.0554 12.8 2.1 14954 -- --
215.64 0.686 3.2 0.128 -- -- -- -- -0.215 -- -- -- -- --
214.81 0.686 3.2 -- 0.146 -- -- -- -0.229 9.72 -- -- -- --
195.46 0.651 3.14 -- -- 0.905 -- -- 0.0523 -- 2.06 14120 -- --
216.07 0.686 3.2 -- -- -- -- -- -0.229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.71 radiation 1 14400 > th dose independent rect. 15 1
2 176.75 radiation 1 14400 < th dose independent rect. 15 1
23 181.69 atmosphere 1015 43200 > th dose independent rect. 23 1
24 181.75 atmosphere 1015 43200 < th dose independent rect. 23 1
26 181.97 radiation 1 14400 < th dose dependent rect. 15 2
29 182.23 atmosphere 1015 43200 > th dose independent rect. 17 7
38 182.42 atmosphere 1015 43200 < th dose independent rect. 16 8
40 182.44 atmosphere 1015 43200 > th dose dependent rect. 23 1
43 182.50 atmosphere 1010 43200 > th dose dependent rect. 11 2
48 182.55 atmosphere 1010 43200 > th dose dependent rect. 9 4
63 182.58 atmosphere 1010 43200 > th dose dependent rect. 9 1
70 182.59 atmosphere 1010 43200 > th dose dependent rect. 7 1
138 182.68 atmosphere 1010 43200 > th dose dependent sin 0 NA
221 182.82 atmosphere 1010 43200 > th dose dependent rect. 17 1
362 182.99 atmosphere 1010 43200 > th dose dependent no NA NA
381 183.00 atmosphere 1010 43200 > th dose dependent rect. 14 23
399 183.01 atmosphere 1010 43200 > th dose dependent rect. 11 23
440 183.05 radiation 1 14400 > th dose independent rect. 6 11
466 183.07 radiation 1 14400 < th dose independent rect. 6 11
561 183.19 atmosphere 1015 43200 > th dose independent sin 16 NA
602 183.25 atmosphere 1015 43200 < th dose independent sin 15 NA
646 183.31 atmosphere 1010 43200 < th dose independent rect. 13 2
706 183.41 atmosphere 1010 43200 > th dose independent rect. 13 2
789 183.54 atmosphere 1010 43200 < th dose independent rect. 9 6
813 183.57 atmosphere 1010 43200 < th dose independent rect. 7 9
819 183.58 atmosphere 1010 43200 > th dose independent rect. 9 7
933 183.68 radiation 1 43200 < th dose independent rect. 14 16
951 183.69 radiation 1 43200 > th dose independent rect. 14 16
970 183.71 atmosphere 1010 43200 < th dose independent rect. 9 2