BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0151300 Os03g0151300|AK110927
         (118 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0151300  Similar to Early flowering 6                        246   3e-66
Os12g0279100  Transcription factor jumonji, JmjN domain cont...   145   9e-36
Os01g0907400  Transcription factor jumonji, JmjN domain cont...   143   2e-35
Os10g0577600  Similar to PLU-1 protein                             93   5e-20

>Os03g0151300 Similar to Early flowering 6
          Length = 118

 Score =  246 bits (628), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
           LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ
Sbjct: 1   LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60

Query: 61  QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSFL 118
           QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSFL
Sbjct: 61  QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSFL 118



>Os12g0279100 Transcription factor jumonji, JmjN domain containing protein
          Length = 1366

 Score =  145 bits (365), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/118 (55%), Positives = 84/118 (71%)

Query: 1   LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
           LVQ  GEFV+TFP AYH GFSHGFNCGEA+N ATP WL+ AKEAA+RRA  N  PM+SH 
Sbjct: 304 LVQKAGEFVITFPGAYHSGFSHGFNCGEASNIATPHWLQVAKEAAIRRASTNCGPMVSHY 363

Query: 61  QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSFL 118
           QLLY LA+S   R P+   S  R+SRLRD+ K + +++VK+ F+  +   N L+ + L
Sbjct: 364 QLLYELALSLRPREPKNFYSVPRSSRLRDKNKNEGDIMVKENFVGSVTENNNLLSALL 421



>Os01g0907400 Transcription factor jumonji, JmjN domain containing protein
          Length = 1286

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 88/118 (74%)

Query: 1   LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
           LVQ  GEFVVTFP +YH GFSHGFNCGEA+N ATP+WL+ AKEAA+RRA +N  PM+SH 
Sbjct: 319 LVQNAGEFVVTFPGSYHCGFSHGFNCGEASNIATPEWLRIAKEAAIRRASINRPPMVSHY 378

Query: 61  QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSFL 118
           QLLY LA+S   R P       R+SR++++KK + E LVK+ F+Q++I +NEL+   L
Sbjct: 379 QLLYDLALSMRFREPSNGEMETRSSRIKEKKKCEGEQLVKKMFIQNVIEDNELLSHLL 436



>Os10g0577600 Similar to PLU-1 protein
          Length = 871

 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 4/81 (4%)

Query: 2   VQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQ 61
           VQ PGEFV+TFPR+YH GFSHGFNCGEA NFA   W      A+ R A++N  P+L+H++
Sbjct: 386 VQKPGEFVITFPRSYHAGFSHGFNCGEAVNFAISDWFPLGSVASRRYALLNRTPLLAHEE 445

Query: 62  LL----YLLAVSFISRNPREL 78
           LL     LL+   ++ +P+ L
Sbjct: 446 LLCRSAVLLSHKLLNSDPKSL 466



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,578,047
Number of extensions: 114640
Number of successful extensions: 424
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)