Os01g0907400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor jumonji, JmjN domain containing protein.
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Os01g0907400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor jumonji, JmjN domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.66 | 0.268 | 9.7 | 1.59 | 1.04 | 0.601 | -0.184 | -0.797 | 0.369 | 17.3 | 80 | 1331 | -- | -- |
| 33.23 | 0.268 | 9.7 | 1.52 | 1.04 | 0.559 | -0.232 | -- | 0.354 | 17.3 | 80.56 | 1320 | -- | -- |
| 32.73 | 0.266 | 9.7 | 1.59 | 1.04 | 0.603 | -- | -0.824 | 0.371 | 17.3 | 80.21 | 1314 | -- | -- |
| 33.35 | 0.269 | 9.7 | 1.52 | 1.04 | 0.551 | -- | -- | 0.354 | 17.4 | 80.82 | 1299 | -- | -- |
| 81.73 | 0.423 | 9.7 | 1.46 | -- | -0.381 | -- | -0.064 | 0.295 | -- | 80.21 | 1314 | -- | -- |
| 37.33 | 0.286 | 9.71 | 1.51 | 1.08 | -- | -0.177 | -- | 0.32 | 17.2 | -- | -- | -- | -- |
| 37.41 | 0.286 | 9.71 | 1.51 | 1.08 | -- | -- | -- | 0.319 | 17.2 | -- | -- | -- | -- |
| 81.76 | 0.423 | 9.7 | 1.46 | -- | -0.382 | -- | -- | 0.295 | -- | 80.21 | 1314 | -- | -- |
| 89.33 | 0.44 | 9.7 | -- | 1.04 | 0.743 | -- | -- | 0.358 | 17.4 | 87.92 | 2754 | -- | -- |
| 98.37 | 0.463 | 9.7 | 1.47 | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
| 97.4 | 0.462 | 9.75 | -- | 1.05 | -- | -- | -- | 0.151 | 17.3 | -- | -- | -- | -- |
| 138.03 | 0.549 | 9.73 | -- | -- | -0.391 | -- | -- | 0.133 | -- | 80.21 | 1314 | -- | -- |
| 155.45 | 0.582 | 9.73 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.32 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 2 | 30.38 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 3 | 30.53 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 5 | 30.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 6 | 30.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 10 | 30.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 13 | 30.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 15 | 30.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 17 | 30.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 19 | 30.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 20 | 30.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 23 | 30.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 24 | 30.94 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 26 | 30.94 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 29 | 30.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 31 | 30.94 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 34 | 30.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 37 | 30.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 38 | 30.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 39 | 30.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 42 | 31.00 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 50 | 31.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 51 | 31.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 53 | 31.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 93 | 31.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 20 |
| 95 | 31.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 97 | 31.27 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 115 | 31.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 128 | 31.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 143 | 31.43 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 146 | 31.44 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 156 | 31.49 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 199 | 31.61 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 202 | 31.63 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 222 | 31.67 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 280 | 31.75 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 312 | 31.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 318 | 31.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 320 | 31.79 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 324 | 31.80 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 4 |
| 327 | 31.80 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 334 | 31.81 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 349 | 31.83 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 356 | 31.86 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 370 | 31.88 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 372 | 31.89 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 374 | 31.90 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 390 | 31.90 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 421 | 31.92 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 465 | 31.97 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 535 | 32.05 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 586 | 32.08 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 610 | 32.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 653 | 32.14 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 654 | 32.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 671 | 32.16 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 674 | 32.17 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 683 | 32.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 701 | 32.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 721 | 32.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 724 | 32.22 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 726 | 32.22 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 727 | 32.22 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 730 | 32.22 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 731 | 32.22 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 745 | 32.22 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 755 | 32.22 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 775 | 32.25 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 790 | 32.26 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 800 | 32.27 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 810 | 32.28 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 847 | 32.30 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 887 | 32.33 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 901 | 32.34 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 903 | 32.34 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 969 | 32.37 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 5 |