Os03g0151300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Early flowering 6.
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Os03g0151300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Early flowering 6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.78 | 0.569 | 3.99 | 2.47 | 0.792 | -1.91 | -0.69 | 3.66 | 0.404 | 14.5 | 9.962 | 225 | -- | -- |
| 154.47 | 0.579 | 4.05 | 1.93 | 0.831 | -1.85 | 0.145 | -- | 0.26 | 14.3 | 12.83 | 172 | -- | -- |
| 148.12 | 0.567 | 4.01 | 2.37 | 0.795 | -1.9 | -- | 3.13 | 0.376 | 14.3 | 0.9 | 223 | -- | -- |
| 154.41 | 0.579 | 4.06 | 1.91 | 0.834 | -1.87 | -- | -- | 0.251 | 14.2 | 13.28 | 173 | -- | -- |
| 153.88 | 0.578 | 3.99 | 2.56 | -- | -1.56 | -- | 3.07 | 0.401 | -- | -0.3312 | 979 | -- | -- |
| 189.48 | 0.645 | 4.12 | 1.51 | 0.418 | -- | 0.112 | -- | -0.00818 | 11.9 | -- | -- | -- | -- |
| 189.53 | 0.645 | 4.12 | 1.51 | 0.418 | -- | -- | -- | -0.00748 | 12 | -- | -- | -- | -- |
| 161.94 | 0.593 | 4.07 | 1.93 | -- | -1.55 | -- | -- | 0.236 | -- | 12.04 | 904 | -- | -- |
| 240.26 | 0.722 | 4.13 | -- | 0.573 | -0.931 | -- | -- | -0.0691 | 13.4 | 8.655 | 172 | -- | -- |
| 200.51 | 0.662 | 4.12 | 1.5 | -- | -- | -- | -- | -0.0133 | -- | -- | -- | -- | -- |
| 250 | 0.74 | 4.15 | -- | 0.399 | -- | -- | -- | -0.176 | 11.8 | -- | -- | -- | -- |
| 248.78 | 0.735 | 4.14 | -- | -- | -0.796 | -- | -- | -0.0791 | -- | 5.002 | 803 | -- | -- |
| 260 | 0.753 | 4.16 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.03 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 2 | 144.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 3 | 144.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 5 | 144.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 14 | 146.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 17 | 146.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 29 | 146.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 31 | 147.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 32 | 147.05 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 61 | 148.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 81 | 148.53 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 87 | 148.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 88 | 148.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 93 | 148.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 103 | 148.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 108 | 148.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 112 | 148.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 136 | 149.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 145 | 149.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 172 | 149.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 15 |
| 222 | 149.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 15 |
| 228 | 149.75 | temperature | 10 | 1440 | > th | dose dependent | sin | 6 | NA |
| 260 | 149.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 308 | 149.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 336 | 150.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 377 | 150.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 427 | 150.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 442 | 150.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 445 | 150.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 498 | 150.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 805 | 151.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 847 | 151.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 987 | 151.49 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 993 | 151.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |