BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0151300 Os03g0151300|AK110927
(118 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04240.1 | chr5:1169544-1174638 FORWARD LENGTH=1341 190 1e-49
AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361 141 7e-35
AT5G46910.1 | chr5:19046888-19050880 FORWARD LENGTH=788 93 2e-20
AT1G63490.1 | chr1:23544938-23551946 REVERSE LENGTH=1117 71 9e-14
AT1G08620.1 | chr1:2737554-2743370 FORWARD LENGTH=1210 64 1e-11
AT1G30810.1 | chr1:10938139-10941505 REVERSE LENGTH=820 64 2e-11
AT4G20400.1 | chr4:11009004-11013588 FORWARD LENGTH=955 62 6e-11
AT2G34880.1 | chr2:14711880-14716634 REVERSE LENGTH=807 61 1e-10
AT2G38950.1 | chr2:16261599-16265044 FORWARD LENGTH=709 56 3e-09
>AT5G04240.1 | chr5:1169544-1174638 FORWARD LENGTH=1341
Length = 1340
Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 102/118 (86%)
Query: 1 LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
LVQ PGEFVVTFPR+YHVGFSHGFNCGEAANF TPQWL AKEAAVRRA MNYLPMLSHQ
Sbjct: 380 LVQNPGEFVVTFPRSYHVGFSHGFNCGEAANFGTPQWLNVAKEAAVRRAAMNYLPMLSHQ 439
Query: 61 QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSFL 118
QLLYLL +SF+SR PR LL G R+SRLRDR++E+RE LVK+ F++D+++EN+ + L
Sbjct: 440 QLLYLLTMSFVSRVPRSLLPGGRSSRLRDRQREEREFLVKRAFVEDILNENKNLSVLL 497
>AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361
Length = 1360
Score = 141 bits (356), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 86/117 (73%)
Query: 1 LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
LVQ PGEFVVTFP AYH GFSHGFN GEA+N ATP+WL+ AK+AA+RRA +NY PM+SH
Sbjct: 321 LVQNPGEFVVTFPGAYHSGFSHGFNFGEASNIATPEWLRMAKDAAIRRAAINYPPMVSHL 380
Query: 61 QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQDMISENELICSF 117
QLLY ++ SR P + R+SRL+D+ + + E L K+ F+Q++I NEL+ S
Sbjct: 381 QLLYDFVLALGSRVPTSINPKPRSSRLKDKARSEGERLTKKLFVQNIIHNNELLSSL 437
>AT5G46910.1 | chr5:19046888-19050880 FORWARD LENGTH=788
Length = 787
Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 58/91 (63%), Gaps = 9/91 (9%)
Query: 2 VQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQ 61
VQ PGEFVVTFPRAYH GFSHGFNCGEA NFA W F A+ R A +N +P+L H++
Sbjct: 373 VQKPGEFVVTFPRAYHAGFSHGFNCGEAVNFAMGDWFPFGAIASCRYAHLNRVPLLPHEE 432
Query: 62 LL----YLLAVSFISRN----PRELLSGIRT 84
L+ LL S S N P E LSG R+
Sbjct: 433 LICKEAMLLNSSSKSENLDLTPTE-LSGQRS 462
>AT1G63490.1 | chr1:23544938-23551946 REVERSE LENGTH=1117
Length = 1116
Score = 71.2 bits (173), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 1 LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
++Q PG FV+TFP+++H GF+ G NC EA NFAT WL + A + ++SH+
Sbjct: 151 VLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGGSGAELYRLYRKPSVISHE 210
Query: 61 QLLYLLAVSFISRNPRELLSGIRTSRLRDRKKEDRELLVKQEFLQ 105
+LL ++A N + R+ ++K RE L K L+
Sbjct: 211 ELLCVVAKGNCCNNEGSIHLKKELLRIYSKEKTWREQLWKSGILR 255
>AT1G08620.1 | chr1:2737554-2743370 FORWARD LENGTH=1210
Length = 1209
Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 2 VQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQ 61
VQ+ GEFV+TFPRAYH GF+ GFNC EA N A WL + A +SH +
Sbjct: 480 VQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDK 539
Query: 62 LL 63
LL
Sbjct: 540 LL 541
>AT1G30810.1 | chr1:10938139-10941505 REVERSE LENGTH=820
Length = 819
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 1 LVQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQ 60
+VQ GE+V+TFPRAYH GF+ GFNC EA N A WL + A + LSH
Sbjct: 379 VVQNSGEYVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVELYSKETRKTSLSHD 438
Query: 61 QLL 63
+LL
Sbjct: 439 KLL 441
>AT4G20400.1 | chr4:11009004-11013588 FORWARD LENGTH=955
Length = 954
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 2 VQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQ 61
VQ GEF++TFP+AYH GF+ GFNC EA N A WL + A + LSH +
Sbjct: 382 VQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDK 441
Query: 62 LLYLLAV 68
LL A+
Sbjct: 442 LLLGAAM 448
>AT2G34880.1 | chr2:14711880-14716634 REVERSE LENGTH=807
Length = 806
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 2 VQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQ 61
VQ GE+V+TFPRAYH GF+ GFNC EA N A WL + A + LSH +
Sbjct: 380 VQNAGEYVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQNAVEIYSQETRKTSLSHDK 439
Query: 62 LL 63
+L
Sbjct: 440 IL 441
>AT2G38950.1 | chr2:16261599-16265044 FORWARD LENGTH=709
Length = 708
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 2 VQYPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQ 61
VQ+PG++V+ FP +Y+ F GFNC E ANFA WL A M+ ++S+ +
Sbjct: 407 VQHPGQYVIIFPGSYYSAFDCGFNCLEKANFAPLDWLPHGDIAVQVNQEMSKTSLISYDK 466
Query: 62 LLY 64
LL+
Sbjct: 467 LLF 469
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,387,122
Number of extensions: 78372
Number of successful extensions: 287
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 9
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)