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Os10g0577600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PLU-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0349) R2 : 0.483
β1 : -0.888 (0.128) R2dD : 0.0594 R2D : 0.0335
β2 : 1.46 (0.0892) R2dC : 0.316 R2C : 0.322
β3 : 1.36 (0.15) R2dE : 0.0922 R2E : 0.0971
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.378 (0.0753) R2dN8 : 0.0405 R2N8 : -0.0075
σ : 0.652
deviance : 195.74
__
_____
C
peak time of C : 4.16
E
wheather : radiation
threshold : 42.38
memory length : 2795
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.77 0.635 10.8 -0.656 1.53 1.53 -0.947 3.53 -0.273 3.92 47.74 3345 -- --
195.48 0.651 10.8 -0.832 1.5 1.41 -1.14 -- -0.337 3.59 47.74 2912 -- --
184.98 0.633 10.7 -0.647 1.52 1.62 -- 3.99 -0.25 4.04 49.37 3344 -- --
195.74 0.652 10.8 -0.888 1.46 1.36 -- -- -0.378 4.16 42.38 2795 -- --
303.09 0.811 10.7 -0.514 -- 1.72 -- 4.39 -0.24 -- 48.07 2820 -- --
225.89 0.705 10.7 -0.909 1.54 -- -0.955 -- -0.282 3.75 -- -- -- --
228.49 0.708 10.7 -0.895 1.54 -- -- -- -0.277 3.86 -- -- -- --
312.76 0.824 10.8 -0.886 -- 1.47 -- -- -0.396 -- 40 2707 -- --
216.77 0.686 10.7 -- 1.49 1.35 -- -- -0.259 4.06 43.7 2866 -- --
358.64 0.885 10.7 -0.831 -- -- -- -- -0.236 -- -- -- -- --
249.58 0.739 10.7 -- 1.52 -- -- -- -0.177 3.87 -- -- -- --
333.3 0.85 10.8 -- -- 1.54 -- -- -0.281 -- 42.73 2707 -- --
376.86 0.906 10.7 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.16 wind 5.0 43200 < th dose dependent rect. 1 3
3 181.02 wind 1.0 43200 > th dose dependent rect. 1 3
5 181.08 wind 9.0 270 < th dose dependent rect. 6 18
10 181.63 wind 5.0 270 < th dose independent rect. 6 18
17 182.43 wind 5.0 43200 < th dose dependent rect. 2 1
25 182.98 wind 9.0 270 < th dose dependent rect. 5 20
81 185.59 temperature 30.0 4320 > th dose dependent rect. 18 1
116 186.15 wind 3.0 43200 < th dose independent rect. 2 2
121 186.25 radiation 40.0 1440 > th dose independent rect. 14 19
127 186.48 wind 7.0 10 < th dose independent rect. 8 18
137 186.68 wind 3.0 43200 > th dose independent rect. 2 2
138 186.71 wind 9.0 30 < th dose dependent rect. 19 7
147 186.98 wind 5.0 10 < th dose dependent rect. 2 6
152 187.09 wind 3.0 43200 < th dose independent rect. 24 5
153 187.15 humidity 70.0 14400 < th dose independent rect. 11 1
158 187.26 temperature 25.0 90 < th dose independent rect. 2 17
161 187.35 wind 9.0 270 < th dose dependent rect. 17 8
164 187.39 wind 3.0 43200 > th dose independent rect. 24 5
167 187.43 radiation 40.0 1440 < th dose independent rect. 14 19
170 187.50 temperature 25.0 270 < th dose independent rect. 1 4
175 187.59 wind 5.0 30 < th dose independent rect. 19 7
180 187.67 atmosphere 995.0 10 > th dose independent rect. 8 18
191 187.96 precipitation 0.1 270 < th dose independent rect. 1 4
192 187.96 precipitation 0.1 270 < th dose dependent rect. 1 4
197 188.01 precipitation 0.1 270 < th dose independent rect. 24 6
199 188.01 wind 7.0 270 < th dose dependent rect. 1 4
200 188.01 precipitation 0.1 270 < th dose dependent rect. 24 6
203 188.03 radiation 40.0 1440 > th dose independent rect. 14 1
233 188.56 humidity 50.0 10 > th dose dependent rect. 19 7
235 188.61 humidity 50.0 90 > th dose dependent rect. 19 7
237 188.62 radiation 40.0 1440 < th dose independent rect. 14 1
269 188.78 radiation 20.0 14400 < th dose dependent rect. 19 8
281 188.93 radiation 40.0 1440 < th dose independent rect. 14 13
289 189.07 wind 9.0 270 < th dose dependent rect. 24 6
293 189.12 radiation 40.0 1440 < th dose independent rect. 14 11
295 189.13 radiation 10.0 14400 < th dose dependent rect. 22 5
308 189.26 precipitation 0.1 90 < th dose independent rect. 7 19
310 189.26 precipitation 0.1 90 < th dose dependent rect. 7 19
321 189.40 radiation 30.0 1440 > th dose dependent rect. 14 1
328 189.45 precipitation 0.1 10 < th dose independent rect. 2 6
330 189.45 temperature 15.0 270 > th dose independent rect. 6 18
332 189.45 precipitation 0.1 10 < th dose dependent rect. 2 6
339 189.53 wind 5.0 270 < th dose independent rect. 1 4
341 189.54 temperature 15.0 270 > th dose independent rect. 5 20
354 189.64 wind 7.0 270 < th dose independent rect. 24 6
355 189.64 radiation 10.0 270 < th dose independent rect. 24 6
358 189.65 atmosphere 1010.0 270 < th dose independent rect. 24 6
364 189.67 temperature 10.0 270 > th dose independent rect. 1 4
367 189.67 humidity 50.0 270 > th dose independent rect. 1 4
370 189.67 atmosphere 995.0 270 > th dose independent rect. 1 4
371 189.67 atmosphere 1010.0 270 < th dose independent rect. 1 4
373 189.67 radiation 1.0 270 < th dose independent rect. 1 4
379 189.67 radiation 40.0 1440 < th dose independent rect. 19 14
381 189.67 radiation 10.0 270 < th dose dependent rect. 1 4
385 189.68 temperature 10.0 270 > th dose independent rect. 24 6
387 189.68 temperature 30.0 270 < th dose independent rect. 24 6
388 189.68 humidity 50.0 270 > th dose independent rect. 24 6
391 189.68 atmosphere 995.0 270 > th dose independent rect. 24 6
399 189.70 radiation 40.0 1440 < th dose independent rect. 14 9
410 189.79 radiation 40.0 270 < th dose dependent rect. 24 6
416 189.81 radiation 40.0 1440 < th dose independent rect. 14 4
417 189.81 wind 5.0 270 < th dose independent rect. 17 8
420 189.86 temperature 10.0 270 > th dose dependent rect. 24 6
424 189.87 temperature 10.0 270 > th dose dependent rect. 1 4
427 189.90 humidity 70.0 14400 > th dose independent rect. 11 1
432 189.95 radiation 40.0 1440 < th dose independent rect. 14 7
437 189.98 precipitation 0.1 270 < th dose independent rect. 5 20
439 189.98 precipitation 0.1 270 < th dose dependent rect. 5 20
442 189.99 radiation 30.0 1440 > th dose dependent rect. 14 18
454 190.05 radiation 30.0 1440 > th dose dependent rect. 14 3
478 190.10 radiation 40.0 1440 > th dose independent rect. 8 1
527 190.19 radiation 40.0 1440 < th dose independent rect. 22 11
528 190.20 humidity 50.0 270 > th dose dependent rect. 1 4
541 190.27 atmosphere 1015.0 270 < th dose dependent rect. 1 4
545 190.28 temperature 10.0 10 > th dose dependent rect. 2 6
548 190.30 precipitation 0.1 10 < th dose independent rect. 8 18
550 190.30 precipitation 0.1 10 < th dose dependent rect. 8 18
587 190.57 precipitation 0.1 30 < th dose independent rect. 19 7
588 190.57 precipitation 0.1 30 < th dose dependent rect. 19 7
601 190.69 atmosphere 995.0 270 > th dose independent rect. 5 20
609 190.73 wind 9.0 10 < th dose independent rect. 2 6
610 190.73 temperature 10.0 10 > th dose independent rect. 2 6
612 190.73 temperature 30.0 10 < th dose independent rect. 2 6
613 190.73 humidity 50.0 10 > th dose independent rect. 2 6
615 190.73 atmosphere 995.0 10 > th dose independent rect. 2 6
616 190.73 atmosphere 1015.0 10 < th dose independent rect. 2 6
617 190.73 temperature 10.0 90 > th dose independent rect. 19 7
618 190.73 temperature 30.0 90 < th dose independent rect. 19 7
619 190.73 humidity 50.0 90 > th dose independent rect. 19 7
621 190.73 atmosphere 995.0 90 > th dose independent rect. 19 7
622 190.73 radiation 1.0 90 < th dose independent rect. 19 7
627 190.73 temperature 10.0 90 > th dose independent rect. 2 17
628 190.73 atmosphere 1015.0 90 < th dose independent rect. 2 17
629 190.73 temperature 10.0 10 > th dose independent rect. 8 18
632 190.73 radiation 1.0 90 < th dose dependent rect. 19 7
642 190.76 radiation 30.0 10 < th dose independent rect. 2 6
654 190.80 radiation 20.0 4320 > th dose dependent rect. 6 2
730 191.01 precipitation 0.1 43200 > th dose dependent rect. 18 2
740 191.06 radiation 1.0 4320 < th dose independent rect. 18 9
744 191.08 radiation 40.0 4320 > th dose dependent rect. 13 22
746 191.11 wind 3.0 14400 > th dose independent rect. 14 1
760 191.15 precipitation 0.1 10 < th dose independent rect. 2 17
761 191.15 precipitation 0.1 10 < th dose dependent rect. 2 17
784 191.18 temperature 25.0 14400 > th dose dependent rect. 22 8
785 191.19 humidity 50.0 10 > th dose dependent rect. 2 6
795 191.21 radiation 40.0 1440 < th dose dependent rect. 19 11
801 191.23 humidity 70.0 30 > th dose dependent rect. 21 5
803 191.24 radiation 1.0 4320 < th dose independent rect. 18 7
805 191.24 humidity 50.0 270 > th dose dependent rect. 24 6
816 191.27 radiation 40.0 4320 > th dose dependent rect. 14 20
843 191.36 radiation 40.0 1440 < th dose independent rect. 8 1
861 191.47 radiation 20.0 4320 > th dose independent rect. 6 2
891 191.51 atmosphere 1015.0 1440 < th dose independent rect. 3 6
892 191.51 precipitation 0.1 270 < th dose independent rect. 1 17
894 191.51 precipitation 0.1 270 < th dose dependent rect. 1 17
902 191.53 radiation 40.0 4320 > th dose dependent rect. 9 1
953 191.66 wind 3.0 14400 < th dose independent rect. 14 1
958 191.68 radiation 40.0 4320 > th dose dependent sin 12 NA
963 191.70 radiation 40.0 1440 < th dose independent rect. 24 9
970 191.72 radiation 40.0 4320 < th dose dependent rect. 7 1