Os12g0279100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor jumonji, JmjN domain containing protein.
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Os12g0279100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor jumonji, JmjN domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.53 | 0.246 | 8.93 | 1.21 | 0.634 | -0.157 | -0.631 | 2.97 | 0.269 | 17.5 | 10.38 | 2437 | -- | -- |
| 35.52 | 0.28 | 9.02 | 0.469 | 0.696 | -0.296 | -0.737 | -- | 0.0837 | 17 | -21.97 | 10598 | -- | -- |
| 28.36 | 0.248 | 8.92 | 1.24 | 0.63 | -0.143 | -- | 3.05 | 0.273 | 17.5 | 7.204 | 2605 | -- | -- |
| 36.89 | 0.285 | 9.03 | 0.471 | 0.696 | -0.316 | -- | -- | 0.0828 | 17.1 | -21.97 | 10598 | -- | -- |
| 48.84 | 0.325 | 8.91 | 1.23 | -- | -0.232 | -- | 2.99 | 0.272 | -- | 13.21 | 2623 | -- | -- |
| 36.39 | 0.283 | 9.03 | 0.41 | 0.635 | -- | -0.772 | -- | 0.0423 | 17.3 | -- | -- | -- | -- |
| 37.85 | 0.288 | 9.04 | 0.41 | 0.631 | -- | -- | -- | 0.0386 | 17.4 | -- | -- | -- | -- |
| 57.48 | 0.353 | 9.01 | 0.538 | -- | -0.258 | -- | -- | 0.104 | -- | -20.21 | 9940 | -- | -- |
| 39.08 | 0.291 | 9.07 | -- | 0.632 | 0.288 | -- | -- | -0.0931 | 17.4 | -33.38 | 47520 | -- | -- |
| 58.59 | 0.358 | 9.03 | 0.389 | -- | -- | -- | -- | 0.023 | -- | -- | -- | -- | -- |
| 42.28 | 0.304 | 9.05 | -- | 0.624 | -- | -- | -- | -0.00711 | 17.5 | -- | -- | -- | -- |
| 58.1 | 0.355 | 9.05 | -- | -- | 0.528 | -- | -- | -0.0797 | -- | -4.294 | 294 | -- | -- |
| 62.58 | 0.369 | 9.04 | -- | -- | -- | -- | -- | -0.0201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 2 | 26.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 8 | 27.06 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 18 | 27.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 38 | 27.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 46 | 27.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 52 | 27.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 56 | 27.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 57 | 27.45 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 63 | 27.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 73 | 27.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 7 |
| 79 | 27.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 81 | 27.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 82 | 27.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 88 | 27.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 95 | 27.52 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 103 | 27.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 121 | 27.54 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 123 | 27.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 189 | 27.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 193 | 27.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 197 | 27.59 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 208 | 27.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 217 | 27.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 8 |
| 232 | 27.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 270 | 27.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 340 | 27.66 | temperature | 10 | 4320 | > th | dose dependent | sin | 22 | NA |
| 359 | 27.67 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 469 | 27.71 | temperature | 30 | 4320 | < th | dose dependent | sin | 22 | NA |
| 481 | 27.72 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 516 | 27.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 525 | 27.74 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 565 | 27.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 700 | 27.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 705 | 27.83 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 908 | 27.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 914 | 27.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 927 | 27.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 22 |
| 930 | 27.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 988 | 27.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 23 |