BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0140500 Os03g0140500|AK106342
(286 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0140500 Protein of unknown function DUF26 domain conta... 360 e-100
Os04g0537800 Protein of unknown function DUF26 domain conta... 117 1e-26
Os02g0643900 97 2e-20
Os06g0253600 Protein of unknown function DUF26 domain conta... 82 6e-16
Os02g0734800 Protein of unknown function DUF26 domain conta... 79 3e-15
Os08g0136300 Similar to (clone wusl1032) mRNA sequence 70 2e-12
>Os03g0140500 Protein of unknown function DUF26 domain containing protein
Length = 286
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/286 (67%), Positives = 194/286 (67%)
Query: 1 MGIPRXXXXXXXXXXXXXXXXXXXXXXXDLYALVYKGCSNQSFPGGAVPPTVXXXXXXXX 60
MGIPR DLYALVYKGCSNQSFPGGAVPPTV
Sbjct: 1 MGIPRALLLLLLHVAVVVVLRSLPVSSADLYALVYKGCSNQSFPGGAVPPTVAALSSSLS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXVFGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARV 120
VFGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARV
Sbjct: 61 DQSASAKFYKTSSSSSASSTSVFGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARV 120
Query: 121 QLTGCLALYEISGFPQVSGTQMLFKTCXXXXXXXXDFEMRRDTAFAQMEASVGGGNGGFY 180
QLTGCLALYEISGFPQVSGTQMLFKTC DFEMRRDTAFAQMEASVGGGNGGFY
Sbjct: 121 QLTGCLALYEISGFPQVSGTQMLFKTCGTGGGGGTDFEMRRDTAFAQMEASVGGGNGGFY 180
Query: 181 ATSYQQVYAMAQCEGDLSSGDCGQCVTQAVQHVEVECGGAPSGQVYLEKCYISYSXXXXX 240
ATSYQQVYAMAQCEGDLSSGDCGQCVTQAVQHVEVECGGAPSGQVYLEKCYISYS
Sbjct: 181 ATSYQQVYAMAQCEGDLSSGDCGQCVTQAVQHVEVECGGAPSGQVYLEKCYISYSYYPHG 240
Query: 241 XXXXXXXXXXXTAKTXXXXXXXXXXXXXXXXCLLFARSLVKKKEDY 286
TAKT CLLFARSLVKKKEDY
Sbjct: 241 IPHGGGIGGQQTAKTVAIVLGGAVGLGFVVICLLFARSLVKKKEDY 286
>Os04g0537800 Protein of unknown function DUF26 domain containing protein
Length = 276
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 83 FGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARVQLTGCLALYEISGFPQVSGTQM 142
+GL+QCRGDL +DCAACV A+ +EVC A+ AA +QL GC Y+ S F M
Sbjct: 82 YGLYQCRGDLGNADCAACVRDAVGQLNEVCAAAYAASLQLEGCYVRYDSSNFVGQPDNAM 141
Query: 143 LFKTCXXXXXXXXDFEMRRDTAFAQMEASVGGGNGGFYATSYQQVYAMAQCEGDLSSGDC 202
+++ C DF RD A ++ GG G+ +S V ++QC GDL++GDC
Sbjct: 142 VYRKCSTSTSGDGDFLKNRDAVLAALQ---GGLANGYKVSSSGNVQGVSQCLGDLAAGDC 198
Query: 203 GQCVTQAVQHVEVECGGAPSGQVYLEKCYISY 234
C+ QAV ++ CG + + VYL +CY+ Y
Sbjct: 199 TTCLAQAVGQLKGTCGTSLAADVYLAQCYVRY 230
>Os02g0643900
Length = 297
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 5/152 (3%)
Query: 83 FGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARVQLTGCLALYEISGFPQVSGTQM 142
+GL+QCRGDLS DC ACV + ++ VC + AA +Q+ GC Y+ + F + T
Sbjct: 92 YGLYQCRGDLSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTT 151
Query: 143 LFKTCXXXXXXXXDFEMRRDTAFAQMEASVGGGNGGFYATSYQQVYAMAQCEGDLSSGDC 202
++ C F RD +++A+ G+ ++ V +AQC GD+ + DC
Sbjct: 152 AYRKCSSSTSRDGAFLSSRDGVLGELQAAA-----GYKLSTSGTVQGVAQCLGDVPANDC 206
Query: 203 GQCVTQAVQHVEVECGGAPSGQVYLEKCYISY 234
C+ +AV ++ CG A + VYL +CY+ Y
Sbjct: 207 TACLAEAVGQLKGACGTALAADVYLAQCYVRY 238
>Os06g0253600 Protein of unknown function DUF26 domain containing protein
Length = 321
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 85/208 (40%), Gaps = 2/208 (0%)
Query: 29 DLYALVYKGCSNQSFPGGA-VPPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFGLFQ 87
D A VY GCS + G V + G++Q
Sbjct: 24 DYTAFVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLVGVYQ 83
Query: 88 CRGDLSGSDCAACVSRAMSSWSEVCGASVAARVQLTGCLALYEISGFPQVSGTQMLFKTC 147
CR DL + C CV A + + +C ++ A VQL C Y F T +LFK C
Sbjct: 84 CRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLFKKC 143
Query: 148 XXXXXXXXDF-EMRRDTAFAQMEASVGGGNGGFYATSYQQVYAMAQCEGDLSSGDCGQCV 206
MR A + A+ G+G + A + V AM+QC GDL + C CV
Sbjct: 144 GGEGGSDTGVVAMRDAALGALVAAAAPAGDGSYRAGAAGYVQAMSQCVGDLGAKACTDCV 203
Query: 207 TQAVQHVEVECGGAPSGQVYLEKCYISY 234
+ A ++ CG A +G+VYL KCY +
Sbjct: 204 SAASSQLKAGCGYASAGEVYLGKCYARF 231
>Os02g0734800 Protein of unknown function DUF26 domain containing protein
Length = 278
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 82 VFGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARVQLTGCLALYEISGFPQVSGTQ 141
V G++QCR DL S C CV A+S S +C + VQL C Y F T
Sbjct: 80 VVGVYQCRSDLPASVCTGCVRSAISRLSSLCAWATGGAVQLRACFVRYGNDTFLGKQDTA 139
Query: 142 MLFKTCXXXXXXXXDFEMRRDTAFAQMEASVGGGNGGFYATSYQQVYAMAQCEGDLSSGD 201
+LFK C MR D+A + A+ GG+ A V AM+QC GDL +
Sbjct: 140 VLFKKCGGSPGDAGGAAMR-DSALGALVAAAAPAGGGYRAGGSGGVQAMSQCVGDLGAKA 198
Query: 202 CGQCVTQAVQHVEVECGGAPSGQVYLEKCYISY 234
C CV+ A ++ CG A +G+VYL KCY +
Sbjct: 199 CSDCVSAAAGQLKAGCGYATAGEVYLGKCYARF 231
>Os08g0136300 Similar to (clone wusl1032) mRNA sequence
Length = 275
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 83 FGLFQCRGDLSGSDCAACVSRAMSSWSEVCGASVAARVQLTGCLALYEISGF-------- 134
+GL QCRGD+SG DC AC+++A C + +R+ C Y+ F
Sbjct: 87 YGLAQCRGDVSGGDCDACLAQAAKQMVSYCNYTSDSRLWYEYCFMRYDNYNFLGEVDTRE 146
Query: 135 -PQVSGTQMLFKTCXXXXXXXXDFEMRRDTAFAQMEASVGGGNGGFYATSYQQVYAMAQC 193
V+ Q M + TA A S G G T + VYA+AQC
Sbjct: 147 DASVTMRQWPDMDNPKAFQKAAGKAMGKATAQAVAVGSSGLGRAKEQYTPFVSVYALAQC 206
Query: 194 EGDLSSGDCGQCVTQAVQHVEVECGGAPSGQVYLEKCYISY 234
DLS C QC++ AV + CG P Q+ C+ Y
Sbjct: 207 TRDLSPPSCAQCLSAAVSKFDKACGSGPGCQIDYSSCWARY 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,952,290
Number of extensions: 213600
Number of successful extensions: 827
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 11
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)