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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0136300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to (clone wusl1032) mRNA sequence.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0252) R2 : 0.0191
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.158 (0.0532) R2dN8 : 0.0247 R2N8 : 0.0191
σ : 0.476
deviance : 103.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.64 0.457 2.9 -0.19 0.0222 -0.341 -0.268 2.54 0.137 12 1.196 6 -- --
101.3 0.472 2.88 -0.0749 0.0526 -0.253 -0.229 -- 0.146 6.66 0.9995 5 -- --
94.34 0.456 2.9 -0.205 0.033 -0.356 -- 2.26 0.137 11 1.1 5 -- --
101.42 0.472 2.88 -0.0785 0.0519 -0.259 -- -- 0.146 7.56 0.9516 5 -- --
94.41 0.455 2.9 -0.205 -- -0.352 -- 2.26 0.137 -- 1.1 5 -- --
103.09 0.476 2.88 -0.0565 0.0933 -- -0.267 -- 0.149 5.96 -- -- -- --
103.26 0.476 2.88 -0.0589 0.092 -- -- -- 0.15 5.75 -- -- -- --
101.56 0.471 2.88 -0.0786 -- -0.269 -- -- 0.147 -- 0.9598 5 -- --
101.58 0.472 2.88 -- 0.0519 -0.253 -- -- 0.155 7.6 0.9299 4 -- --
103.7 0.476 2.88 -0.056 -- -- -- -- 0.152 -- -- -- -- --
103.35 0.476 2.88 -- 0.0911 -- -- -- 0.157 5.78 -- -- -- --
101.73 0.471 2.88 -- -- -0.263 -- -- 0.156 -- 0.9598 5 -- --
103.79 0.476 2.88 -- -- -- -- -- 0.158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.30 radiation 1.0 90 > th dose independent rect. 4 1
11 87.30 radiation 1.0 90 > th dose dependent rect. 4 1
21 88.49 wind 1.0 10 < th dose dependent rect. 2 5
24 89.41 wind 1.0 10 < th dose independent rect. 2 5
32 90.68 wind 1.0 10 < th dose dependent rect. 6 1
38 91.71 wind 1.0 10 < th dose dependent rect. 2 10
43 92.31 wind 1.0 10 < th dose independent rect. 2 10
48 92.37 wind 1.0 10 < th dose dependent rect. 2 14
62 93.18 radiation 1.0 10 < th dose dependent rect. 6 1
82 93.63 wind 1.0 10 < th dose independent rect. 24 8
103 94.44 wind 1.0 10 > th dose independent sin 5 NA
106 94.62 wind 1.0 10 < th dose independent sin 5 NA
130 95.27 wind 1.0 10 > th dose independent rect. 19 23
131 95.29 wind 1.0 10 < th dose independent rect. 24 12
165 95.64 temperature 20.0 10 > th dose independent rect. 2 4
166 95.65 wind 1.0 10 < th dose dependent sin 3 NA
191 96.02 precipitation 0.1 10 > th dose independent rect. 3 1
195 96.02 precipitation 0.1 10 > th dose dependent rect. 3 1
232 96.73 wind 1.0 10 < th dose independent rect. 14 17
234 96.74 wind 1.0 10 < th dose independent rect. 17 14
250 96.83 wind 1.0 10 < th dose independent rect. 11 20
283 97.25 temperature 20.0 90 < th dose independent rect. 5 15
287 97.34 temperature 20.0 270 > th dose independent rect. 2 1
288 97.34 wind 3.0 30 > th dose dependent rect. 20 1
298 97.39 wind 1.0 10 < th dose dependent rect. 24 12
315 97.48 wind 1.0 10 > th dose independent rect. 3 23
321 97.52 wind 1.0 10 < th dose dependent rect. 24 18
325 97.53 wind 1.0 10 > th dose independent no NA NA
351 97.63 wind 1.0 10 < th dose independent rect. 14 22
353 97.64 temperature 20.0 270 < th dose independent rect. 4 1
356 97.64 wind 1.0 10 < th dose independent rect. 17 19
361 97.65 wind 1.0 10 > th dose independent rect. 21 12
414 97.70 wind 1.0 270 < th dose dependent rect. 4 1
415 97.71 wind 1.0 10 < th dose independent no NA NA
442 97.72 wind 1.0 10 < th dose independent rect. 5 23
449 97.77 temperature 20.0 90 < th dose independent sin 0 NA
471 98.01 humidity 90.0 10 < th dose independent rect. 5 1
475 98.03 atmosphere 1005.0 10 > th dose dependent rect. 20 1
491 98.14 humidity 90.0 30 < th dose dependent rect. 20 1
492 98.15 wind 1.0 10 > th dose independent rect. 21 23
515 98.27 wind 3.0 30 > th dose independent rect. 20 1
519 98.29 wind 1.0 10 > th dose independent rect. 1 23
525 98.32 temperature 30.0 10 > th dose dependent rect. 18 16
526 98.33 wind 1.0 10 > th dose independent rect. 11 23
527 98.34 humidity 90.0 30 < th dose independent rect. 20 1
541 98.38 radiation 10.0 1440 < th dose dependent rect. 21 1
543 98.39 temperature 20.0 30 < th dose dependent rect. 6 14
544 98.40 atmosphere 1005.0 30 > th dose independent rect. 20 1
555 98.45 wind 9.0 30 < th dose independent rect. 20 1
556 98.45 temperature 10.0 30 > th dose independent rect. 20 1
558 98.45 temperature 30.0 30 < th dose independent rect. 20 1
559 98.45 humidity 50.0 30 > th dose independent rect. 20 1
562 98.45 atmosphere 995.0 30 > th dose independent rect. 20 1
564 98.45 atmosphere 1010.0 30 < th dose independent rect. 20 1
566 98.45 radiation 1.0 30 < th dose independent rect. 20 1
571 98.45 precipitation 0.1 30 < th dose independent rect. 20 1
575 98.45 temperature 10.0 30 > th dose independent rect. 21 23
576 98.45 radiation 1.0 30 < th dose dependent rect. 20 1
581 98.45 precipitation 0.1 30 < th dose dependent rect. 20 1
582 98.47 temperature 10.0 1440 > th dose independent rect. 21 1
585 98.47 temperature 30.0 1440 < th dose independent rect. 21 1
589 98.47 humidity 50.0 1440 > th dose independent rect. 21 1
595 98.47 atmosphere 995.0 1440 > th dose independent rect. 21 1
596 98.47 radiation 1.0 1440 < th dose independent rect. 21 1
617 98.47 temperature 20.0 90 < th dose independent rect. 7 12
618 98.47 temperature 10.0 1440 > th dose independent rect. 22 23
624 98.49 temperature 10.0 30 > th dose dependent rect. 20 1
625 98.50 temperature 25.0 30 > th dose independent rect. 20 1
631 98.54 temperature 20.0 90 > th dose independent sin 23 NA
637 98.57 temperature 30.0 30 < th dose dependent rect. 20 1
638 98.57 radiation 40.0 14400 < th dose dependent rect. 21 1
640 98.58 humidity 50.0 30 > th dose dependent rect. 20 1
649 98.61 temperature 20.0 90 < th dose independent rect. 5 9
655 98.62 temperature 20.0 90 < th dose independent rect. 5 7
667 98.66 wind 1.0 10 > th dose independent rect. 21 21
671 98.68 wind 9.0 30 < th dose independent rect. 21 23
676 98.70 wind 9.0 30 < th dose dependent rect. 20 1
685 98.74 temperature 20.0 270 < th dose independent rect. 1 19
686 98.75 atmosphere 1015.0 30 < th dose dependent rect. 20 1
704 98.79 wind 1.0 10 < th dose dependent rect. 5 23
707 98.81 temperature 20.0 270 < th dose independent sin 6 NA
711 98.82 temperature 20.0 270 > th dose independent rect. 18 22
712 98.82 wind 1.0 10 > th dose independent rect. 5 23
718 98.85 temperature 20.0 270 > th dose independent sin 8 NA
722 98.86 temperature 20.0 90 < th dose independent rect. 4 4
726 98.86 radiation 10.0 1440 < th dose dependent rect. 22 7
727 98.86 precipitation 0.1 10 > th dose dependent rect. 3 15
732 98.87 precipitation 0.1 10 > th dose independent rect. 3 15
739 98.88 temperature 25.0 90 < th dose dependent rect. 5 3
753 98.91 temperature 20.0 10 < th dose independent rect. 6 2
764 98.93 radiation 1.0 1440 < th dose independent rect. 22 7
769 98.95 temperature 20.0 30 > th dose independent rect. 5 1
781 99.00 temperature 20.0 10 < th dose independent rect. 6 6
788 99.01 temperature 20.0 270 < th dose independent rect. 1 11
817 99.05 temperature 20.0 270 > th dose independent rect. 7 23
825 99.07 temperature 20.0 270 < th dose independent rect. 3 9
834 99.07 radiation 10.0 10 < th dose dependent rect. 12 1
837 99.08 temperature 20.0 270 < th dose independent rect. 1 7
952 99.17 temperature 20.0 270 > th dose independent rect. 23 14
959 99.18 wind 5.0 10 > th dose independent rect. 10 1
964 99.18 wind 5.0 10 > th dose dependent rect. 10 1
993 99.22 wind 7.0 90 > th dose dependent rect. 8 1
997 99.23 temperature 20.0 270 > th dose independent rect. 21 16