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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0253600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.028) R2 : 0.656
β1 : -1.56 (0.105) R2dD : 0.191 R2D : 0.141
β2 : 0.931 (0.0715) R2dC : 0.13 R2C : 0.0854
β3 : -0.839 (0.0829) R2dE : 0.0973 R2E : 0.218
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.832 (0.064) R2dN8 : 0.205 R2N8 : 0.173
σ : 0.512
deviance : 120.71
__
_____
C
peak time of C : 6.59
E
wheather : temperature
threshold : 21.88
memory length : 966
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.98 0.517 4.92 -1.66 0.938 -0.905 0.354 -0.457 -0.875 6.66 21.39 989 -- --
120.25 0.511 4.9 -1.56 0.937 -0.843 0.504 -- -0.84 6.67 21.89 1001 -- --
121.29 0.513 4.92 -1.66 0.94 -0.906 -- -0.476 -0.878 6.62 21.4 985 -- --
120.71 0.512 4.9 -1.56 0.931 -0.839 -- -- -0.832 6.59 21.88 966 -- --
161.3 0.592 4.92 -1.57 -- -0.943 -- -0.14 -0.794 -- 21.85 768 -- --
145.94 0.566 4.96 -1.89 0.991 -- 0.546 -- -1.09 7.15 -- -- -- --
146.73 0.567 4.96 -1.88 0.993 -- -- -- -1.09 7.11 -- -- -- --
161.35 0.592 4.91 -1.52 -- -0.941 -- -- -0.784 -- 21.82 774 -- --
139.74 0.551 4.82 -- 1.06 -1.94 -- -- -0.438 6.94 19.4 7991 -- --
198.69 0.659 4.98 -1.86 -- -- -- -- -1.08 -- -- -- -- --
239.45 0.724 4.91 -- 0.973 -- -- -- -0.885 7.23 -- -- -- --
187.99 0.639 4.86 -- -- -2.06 -- -- -0.54 -- 19 7940 -- --
289.62 0.794 4.93 -- -- -- -- -- -0.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.67 wind 1.0 43200 > th dose dependent rect. 1 1
2 120.71 precipitation 0.1 14400 > th dose dependent rect. 4 6
3 120.74 precipitation 0.1 14400 > th dose independent rect. 4 6
4 120.76 precipitation 0.1 14400 < th dose independent rect. 4 6
5 120.76 precipitation 0.1 14400 < th dose dependent rect. 4 6
6 120.78 temperature 20.0 1440 < th dose independent rect. 5 1
7 120.94 wind 3.0 43200 < th dose dependent rect. 5 1
8 121.20 precipitation 0.1 14400 < th dose independent rect. 5 3
9 121.20 precipitation 0.1 14400 < th dose dependent rect. 5 3
10 121.29 precipitation 0.1 14400 > th dose independent rect. 5 3
11 121.40 wind 1.0 43200 > th dose independent rect. 4 4
12 121.40 precipitation 0.1 14400 > th dose dependent rect. 5 3
23 121.87 precipitation 0.1 14400 > th dose independent rect. 7 1
24 121.87 precipitation 0.1 14400 > th dose dependent rect. 7 1
28 121.93 wind 7.0 43200 < th dose independent rect. 11 1
29 121.98 precipitation 0.1 14400 < th dose independent rect. 4 10
30 121.98 precipitation 0.1 14400 < th dose dependent rect. 4 10
31 122.00 precipitation 0.1 14400 > th dose independent rect. 4 10
33 122.09 wind 9.0 14400 < th dose independent rect. 5 8
35 122.13 precipitation 0.1 14400 < th dose independent rect. 7 1
36 122.13 precipitation 0.1 14400 < th dose dependent rect. 7 1
37 122.16 wind 9.0 43200 < th dose dependent rect. 1 1
38 122.27 wind 7.0 43200 > th dose independent rect. 11 2
45 122.40 wind 9.0 14400 < th dose independent rect. 8 4
53 122.51 wind 7.0 14400 > th dose dependent rect. 10 3
58 122.60 humidity 60.0 43200 < th dose dependent rect. 13 1
64 122.72 temperature 20.0 1440 > th dose independent rect. 5 1
67 122.83 temperature 20.0 270 > th dose dependent sin 6 NA
70 122.88 temperature 20.0 270 > th dose dependent rect. 1 12
72 122.97 temperature 20.0 270 > th dose dependent rect. 23 14
73 122.97 temperature 20.0 270 > th dose dependent rect. 17 21
78 123.08 temperature 20.0 1440 > th dose independent rect. 4 3
82 123.19 precipitation 0.1 14400 > th dose dependent rect. 4 9
96 123.35 humidity 60.0 43200 < th dose dependent rect. 24 17
98 123.35 humidity 60.0 43200 < th dose dependent rect. 21 20
100 123.36 humidity 60.0 43200 < th dose dependent rect. 2 15
108 123.41 humidity 60.0 43200 < th dose dependent rect. 11 6
109 123.41 humidity 60.0 43200 < th dose dependent rect. 7 10
115 123.44 wind 1.0 43200 > th dose dependent rect. 5 1
125 123.51 humidity 60.0 43200 < th dose dependent rect. 11 23
126 123.53 wind 9.0 43200 < th dose dependent rect. 5 1
161 123.74 wind 9.0 14400 > th dose dependent rect. 6 7
163 123.76 humidity 60.0 43200 < th dose dependent sin 0 NA
185 123.82 humidity 60.0 43200 < th dose dependent rect. 16 23
205 123.85 humidity 60.0 43200 < th dose dependent rect. 7 22
207 123.85 humidity 60.0 43200 < th dose dependent rect. 24 22
211 123.86 humidity 60.0 43200 < th dose dependent no NA NA
214 123.86 humidity 60.0 43200 < th dose dependent rect. 2 20
221 123.86 humidity 60.0 43200 < th dose dependent rect. 2 23
262 123.90 humidity 60.0 43200 < th dose dependent rect. 7 15
300 123.92 humidity 60.0 43200 < th dose dependent rect. 11 18
320 124.00 wind 9.0 14400 < th dose independent rect. 2 11
324 124.00 humidity 60.0 43200 < th dose dependent rect. 11 11
348 124.08 humidity 50.0 43200 > th dose independent rect. 15 1
358 124.11 wind 1.0 43200 < th dose independent rect. 4 4
364 124.13 temperature 20.0 720 > th dose independent rect. 2 5
382 124.21 wind 9.0 14400 > th dose independent rect. 7 5
387 124.22 wind 3.0 43200 < th dose dependent rect. 22 8
404 124.29 wind 9.0 14400 < th dose independent rect. 23 14
408 124.30 wind 1.0 43200 > th dose independent rect. 22 8
415 124.33 wind 9.0 14400 > th dose independent rect. 5 8
463 124.51 humidity 50.0 43200 > th dose independent rect. 13 20
466 124.52 humidity 50.0 43200 > th dose independent rect. 13 4
473 124.59 temperature 25.0 720 < th dose dependent rect. 24 19
476 124.60 temperature 30.0 1440 < th dose dependent rect. 4 1
484 124.66 humidity 50.0 43200 > th dose independent rect. 13 7
490 124.71 humidity 50.0 43200 > th dose independent rect. 13 12
504 124.74 humidity 90.0 14400 < th dose dependent rect. 3 1
530 124.83 temperature 15.0 1440 > th dose dependent rect. 4 1
537 124.85 humidity 80.0 14400 > th dose dependent rect. 13 1
545 124.88 humidity 50.0 43200 > th dose independent sin 15 NA
557 124.92 humidity 60.0 43200 < th dose dependent rect. 8 1
592 125.11 precipitation 0.1 14400 > th dose dependent rect. 1 7
596 125.13 wind 1.0 43200 > th dose dependent rect. 11 1
605 125.17 wind 3.0 43200 > th dose independent rect. 1 1
614 125.19 wind 9.0 43200 < th dose dependent rect. 11 1
620 125.21 temperature 25.0 14400 < th dose independent rect. 10 1
647 125.28 precipitation 0.1 14400 < th dose independent rect. 1 7
649 125.28 humidity 50.0 43200 > th dose independent rect. 7 11
655 125.28 precipitation 0.1 14400 < th dose dependent rect. 1 7
666 125.30 precipitation 0.1 14400 > th dose independent rect. 1 7
674 125.31 temperature 25.0 1440 < th dose dependent rect. 17 12
680 125.32 temperature 25.0 1440 < th dose dependent rect. 21 1
683 125.33 humidity 50.0 43200 < th dose dependent sin 10 NA
684 125.33 temperature 10.0 720 > th dose dependent rect. 24 7
702 125.36 temperature 25.0 1440 < th dose dependent rect. 1 4
720 125.38 temperature 20.0 14400 > th dose dependent rect. 13 1
722 125.39 radiation 30.0 43200 < th dose independent rect. 11 1
739 125.40 wind 1.0 43200 < th dose dependent rect. 4 7
742 125.41 radiation 10.0 43200 < th dose independent rect. 12 1
751 125.42 humidity 50.0 43200 > th dose independent rect. 7 18
767 125.44 temperature 25.0 14400 > th dose independent rect. 10 2
768 125.44 humidity 60.0 43200 < th dose independent rect. 8 2
774 125.44 humidity 50.0 43200 > th dose independent rect. 24 18
792 125.45 temperature 20.0 720 > th dose dependent rect. 24 7
848 125.51 temperature 25.0 270 > th dose independent rect. 1 13
862 125.53 humidity 50.0 43200 < th dose independent rect. 14 22
866 125.53 temperature 25.0 1440 < th dose dependent rect. 1 1
887 125.55 humidity 80.0 43200 < th dose independent rect. 6 1
904 125.56 humidity 50.0 43200 > th dose independent no NA NA
905 125.56 radiation 30.0 43200 > th dose independent rect. 11 1
956 125.60 radiation 30.0 43200 < th dose dependent rect. 12 1
958 125.61 humidity 50.0 43200 < th dose independent rect. 13 5
961 125.61 temperature 20.0 14400 > th dose dependent rect. 8 7
965 125.62 humidity 50.0 43200 < th dose independent rect. 14 3
966 125.62 temperature 20.0 1440 > th dose independent rect. 3 12
977 125.63 temperature 20.0 1440 > th dose independent rect. 3 10
993 125.64 temperature 15.0 1440 > th dose dependent rect. 1 4