BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0253600 Os06g0253600|Os06g0253600
(321 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0253600 Protein of unknown function DUF26 domain conta... 418 e-117
Os02g0734800 Protein of unknown function DUF26 domain conta... 265 5e-71
Os04g0537800 Protein of unknown function DUF26 domain conta... 144 9e-35
Os02g0643900 142 5e-34
Os03g0140500 Protein of unknown function DUF26 domain conta... 82 4e-16
>Os06g0253600 Protein of unknown function DUF26 domain containing protein
Length = 321
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/301 (75%), Positives = 226/301 (75%)
Query: 21 GADDYTAFVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLVG 80
GADDYTAFVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLVG
Sbjct: 21 GADDYTAFVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLVG 80
Query: 81 VYQCRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLF 140
VYQCRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLF
Sbjct: 81 VYQCRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLF 140
Query: 141 KKCGGEGGSDTGVVAMRDXXXXXXXXXXXXXXDGSYRAGAAGYVQAMSQCVGDLGAKACT 200
KKCGGEGGSDTGVVAMRD DGSYRAGAAGYVQAMSQCVGDLGAKACT
Sbjct: 141 KKCGGEGGSDTGVVAMRDAALGALVAAAAPAGDGSYRAGAAGYVQAMSQCVGDLGAKACT 200
Query: 201 DCVSAASSQLKAGCGYASAGEVYLGKCYARFWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 260
DCVSAASSQLKAGCGYASAGEVYLGKCYARFW
Sbjct: 201 DCVSAASSQLKAGCGYASAGEVYLGKCYARFWSNAGTGDNNGGGISGGGGGIGGGGNGIS 260
Query: 261 XXXXXXXXXXXXXXXFVPHTYSDHDESGKTXXXXXXXXXXXXXXXXXXSFVRRAGGVGGK 320
FVPHTYSDHDESGKT SFVRRAGGVGGK
Sbjct: 261 GGGGAVGGGNGYAYGFVPHTYSDHDESGKTLAIIIGLVAAVALVIVFLSFVRRAGGVGGK 320
Query: 321 S 321
S
Sbjct: 321 S 321
>Os02g0734800 Protein of unknown function DUF26 domain containing protein
Length = 278
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/212 (67%), Positives = 166/212 (78%), Gaps = 5/212 (2%)
Query: 21 GADDYTAFVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLVG 80
G DDY+ FVYAGCSQ RY +GTQYA+DVD+ L+++ NSA Y+ YAN+TSP++ S +VG
Sbjct: 26 GDDDYSGFVYAGCSQGRYASGTQYASDVDSVLTSVANSAPYSPYANFTSPTSNS---VVG 82
Query: 81 VYQCRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLF 140
VYQCRSDLPA++C GCVRSA ++L+SLC A G VQLRACFVRYGND+FLG+QDT VLF
Sbjct: 83 VYQCRSDLPASVCTGCVRSAISRLSSLCAWATGGAVQLRACFVRYGNDTFLGKQDTAVLF 142
Query: 141 KKCGGEGGSDTGVVAMRDXXXXXXXXXXXXXXDGSYRAGAAGYVQAMSQCVGDLGAKACT 200
KKCGG G D G AMRD G RAG +G VQAMSQCVGDLGAKAC+
Sbjct: 143 KKCGGSPG-DAGGAAMRDSALGALVAAAAPAGGGY-RAGGSGGVQAMSQCVGDLGAKACS 200
Query: 201 DCVSAASSQLKAGCGYASAGEVYLGKCYARFW 232
DCVSAA+ QLKAGCGYA+AGEVYLGKCYARFW
Sbjct: 201 DCVSAAAGQLKAGCGYATAGEVYLGKCYARFW 232
>Os04g0537800 Protein of unknown function DUF26 domain containing protein
Length = 276
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 6/207 (2%)
Query: 28 FVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLV--GVYQCR 85
F+YAGCS ++Y GT + ++++ L+++ N+A Y ++T+ S +G G G+YQCR
Sbjct: 29 FIYAGCSPSKYQPGTPFEGNLNSLLASIANAAPNGGYNSFTAGSNGTGDGAAAYGLYQCR 88
Query: 86 SDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLFKKCGG 145
DL A C CVR A +L +C +A A +QL C+VRY + +F+G+ D ++++KC
Sbjct: 89 GDLGNADCAACVRDAVGQLNEVCAAAYAASLQLEGCYVRYDSSNFVGQPDNAMVYRKCST 148
Query: 146 EGGSDTGVVAMRDXXXXXXXXXXXXXXDGSYRAGAAGYVQAMSQCVGDLGAKACTDCVSA 205
D + RD Y+ ++G VQ +SQC+GDL A CT C++
Sbjct: 149 STSGDGDFLKNRDAVLAALQGGLA----NGYKVSSSGNVQGVSQCLGDLAAGDCTTCLAQ 204
Query: 206 ASSQLKAGCGYASAGEVYLGKCYARFW 232
A QLK CG + A +VYL +CY R+W
Sbjct: 205 AVGQLKGTCGTSLAADVYLAQCYVRYW 231
>Os02g0643900
Length = 297
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 12/211 (5%)
Query: 28 FVYAGCSQARYDAGTQYAADVDTALSALTNSAGY-TAYANYTS-----PSAASGTGLVGV 81
F+YAGCS ++Y+ T + +++++ LS++ ++A AY ++T+ P A+GT G+
Sbjct: 35 FIYAGCSPSKYEPNTAFQSNLNSLLSSIASTASSGAAYNSFTAGGGAGPDPAAGTAAYGL 94
Query: 82 YQCRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLFK 141
YQCR DL C CVR +L ++C +A A +Q+ C+VRY F+GR DTT ++
Sbjct: 95 YQCRGDLSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYR 154
Query: 142 KCGGEGGSDTGVVAMRDXXXXXXXXXXXXXXDGSYRAGAAGYVQAMSQCVGDLGAKACTD 201
KC D ++ RD Y+ +G VQ ++QC+GD+ A CT
Sbjct: 155 KCSSSTSRDGAFLSSRDGVLGELQAA------AGYKLSTSGTVQGVAQCLGDVPANDCTA 208
Query: 202 CVSAASSQLKAGCGYASAGEVYLGKCYARFW 232
C++ A QLK CG A A +VYL +CY R+W
Sbjct: 209 CLAEAVGQLKGACGTALAADVYLAQCYVRYW 239
>Os03g0140500 Protein of unknown function DUF26 domain containing protein
Length = 286
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 98/208 (47%), Gaps = 2/208 (0%)
Query: 24 DYTAFVYAGCSQARYDAGTQYAADVDTALSALTNSAGYTAYANYTSPSAASGTGLVGVYQ 83
D A VY GCS + G V S+L++ + + +S S+AS T + G++Q
Sbjct: 29 DLYALVYKGCSNQSFPGGA-VPPTVAALSSSLSDQSASAKFYKTSSSSSASSTSVFGLFQ 87
Query: 84 CRSDLPAAICGGCVRSAATKLASLCNSAAGAGVQLRACFVRYGNDSFLGRQDTTVLFKKC 143
CR DL + C CV A + + +C ++ A VQL C Y F T +LFK C
Sbjct: 88 CRGDLSGSDCAACVSRAMSSWSEVCGASVAARVQLTGCLALYEISGFPQVSGTQMLFKTC 147
Query: 144 GGEGGSDTGVVAMRDXXXXXXXXXXXXXXDGSYRAGAAGYVQAMSQCVGDLGAKACTDCV 203
G GG T MR +G + A + V AM+QC GDL + C CV
Sbjct: 148 GTGGGGGTD-FEMRRDTAFAQMEASVGGGNGGFYATSYQQVYAMAQCEGDLSSGDCGQCV 206
Query: 204 SAASSQLKAGCGYASAGEVYLGKCYARF 231
+ A ++ CG A +G+VYL KCY +
Sbjct: 207 TQAVQHVEVECGGAPSGQVYLEKCYISY 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,297,959
Number of extensions: 313896
Number of successful extensions: 993
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 979
Number of HSP's successfully gapped: 7
Length of query: 321
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 220
Effective length of database: 11,762,187
Effective search space: 2587681140
Effective search space used: 2587681140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)