BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0121700 Os03g0121700|AK059982
(221 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0121700 Similar to Nascent polypeptide-associated comp... 256 7e-69
Os05g0373700 Similar to Nascent polypeptide-associated comp... 171 5e-43
Os01g0938900 Similar to Nascent polypeptide-associated comp... 167 8e-42
AK070627 167 8e-42
Os01g0698900 Similar to Nascent polypeptide-associated comp... 130 1e-30
AK110559 115 2e-26
>Os03g0121700 Similar to Nascent polypeptide-associated complex alpha
subunit-like protein 3 (NAC-alpha-like protein 3)
(Alpha-NAC-like protein 3)
Length = 221
Score = 256 bits (655), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/221 (64%), Positives = 142/221 (64%)
Query: 1 MVSEQTAPVXXXXXXXXXXXXPPVKPDEAAAKAQPXXXXXXXXXXXXXXXXXXXXXXXXX 60
MVSEQTAPV PPVKPDEAAAKAQP
Sbjct: 1 MVSEQTAPVATAEAELESSAAPPVKPDEAAAKAQPEDDAPVVEDAKDDDDDEEDDDDDED 60
Query: 61 XXXXGEQGAIGNEGXXXXXXXXXXXXAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVF 120
GEQGAIGNEG AMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVF
Sbjct: 61 EDEDGEQGAIGNEGSKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVF 120
Query: 121 KSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKVMSKXXXXXXXXXXXXXXVDET 180
KSPTSETYVIFGEAKIED FRMQDLSKVMSK VDET
Sbjct: 121 KSPTSETYVIFGEAKIEDLSSQLQAQAAQQFRMQDLSKVMSKPDAAAAAPADEEEEVDET 180
Query: 181 GIEPRDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA 221
GIEPRDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA
Sbjct: 181 GIEPRDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA 221
>Os05g0373700 Similar to Nascent polypeptide-associated complex alpha
subunit-like protein 3 (NAC-alpha-like protein 3)
(Alpha-NAC-like protein 3)
Length = 205
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 103/134 (76%), Gaps = 1/134 (0%)
Query: 87 AMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXX 146
AM+KLGMK +TGVSR+T+K++KNILFV+SKPDVFKSPTS+TYVIFGEAKIED
Sbjct: 72 AMVKLGMKSITGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIEDLSSQLQTQ 131
Query: 147 XXXXFRMQDLSKVMSKXXXXXXXXXXXXXXVDETGIEPRDIDLVMTQASVSRAKAVKALK 206
F+ DLS ++SK VDETG+EP+DI+LVMTQA+VSR+KAVKALK
Sbjct: 132 AAEQFKAPDLSSMLSK-PEASTAAQEDDEAVDETGVEPKDIELVMTQATVSRSKAVKALK 190
Query: 207 AHDGDIVSAIMELT 220
A +GDIV+AIMELT
Sbjct: 191 AANGDIVTAIMELT 204
>Os01g0938900 Similar to Nascent polypeptide-associated complex alpha
subunit-like protein 3 (NAC-alpha-like protein 3)
(Alpha-NAC-like protein 3)
Length = 202
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/134 (62%), Positives = 101/134 (75%), Gaps = 2/134 (1%)
Query: 87 AMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXX 146
AM KLGMK +TGVSR+TIK++KNILFV+SKPDVFKSP S+TYVIFGEAKIED
Sbjct: 70 AMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQ 129
Query: 147 XXXXFRMQDLSKVMSKXXXXXXXXXXXXXXVDETGIEPRDIDLVMTQASVSRAKAVKALK 206
F+ DLS V+SK VDE+G+EP+DI+LVMTQA+VSR++AVKALK
Sbjct: 130 AAEQFKAPDLSNVISK--AEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALK 187
Query: 207 AHDGDIVSAIMELT 220
A +GDIV+AIMELT
Sbjct: 188 AANGDIVTAIMELT 201
>AK070627
Length = 202
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/134 (62%), Positives = 101/134 (75%), Gaps = 2/134 (1%)
Query: 87 AMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXX 146
AM KLGMK +TGVSR+TIK++KNILFV+SKPDVFKSP S+TYVIFGEAKIED
Sbjct: 70 AMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQ 129
Query: 147 XXXXFRMQDLSKVMSKXXXXXXXXXXXXXXVDETGIEPRDIDLVMTQASVSRAKAVKALK 206
F+ DLS V+SK VDE+G+EP+DI+LVMTQA+VSR++AVKALK
Sbjct: 130 AAEQFKAPDLSNVISK--AEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALK 187
Query: 207 AHDGDIVSAIMELT 220
A +GDIV+AIMELT
Sbjct: 188 AANGDIVTAIMELT 201
>Os01g0698900 Similar to Nascent polypeptide-associated complex alpha subunit
(NAC-alpha) (Alpha-NAC) (Hom s 2.02)
Length = 458
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 1 MVSEQTAPVXXXXXXXXXXXXPPVKPDEAAAKAQPXXXXXXXXXXXXXXXXXXXXXXXXX 60
MVSEQT PV PVKP+EAAAKAQP
Sbjct: 254 MVSEQT-PVATAEAELVSSAAVPVKPEEAAAKAQPEDDAPIVEDAKDDDDGDEDDDDDGD 312
Query: 61 XXXXGEQGAIGNEGXXXXXXXXXXXXAMMKLGMKPVTGVSRITIKRAKNILFVVSKP-DV 119
GE GA+ N+G AMMKLGMKPVTGVSRITI+RAKNILFVVSKP DV
Sbjct: 313 EDEHGEHGAVVNKGSKQSRSEKKSRKAMMKLGMKPVTGVSRITIERAKNILFVVSKPHDV 372
Query: 120 FKSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSK 158
FKSPTSE+YVIFGEAKIED FRMQDLSK
Sbjct: 373 FKSPTSESYVIFGEAKIEDLSSQLQAQAAQQFRMQDLSK 411
>AK110559
Length = 236
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 66 EQGAIGNEGXXXXXXXXXXXXAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTS 125
E+G +G AM KLGMK V G+ R+ IK+AKNILFV+SKPDVFKSP S
Sbjct: 72 EEGKAAGKGGKQNRAEKKARKAMQKLGMKQVPGIVRVAIKKAKNILFVISKPDVFKSPAS 131
Query: 126 ETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKVMSKXXXXXXXXXXX----------XX 175
+TY+IFGEAKIED F+ + +
Sbjct: 132 DTYIIFGEAKIEDINSQLQANAAEQFKHDAPAGMPDAAAPAAAGGAGAGSLLNTPIDPNE 191
Query: 176 XVDETGIEPRDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELT 220
VDETG++ +I VM+Q +VSRA AVKAL+ G+IV AI+ LT
Sbjct: 192 VVDETGLDKDEIATVMSQTNVSRAHAVKALR-KTGNIVDAILALT 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,644,932
Number of extensions: 78898
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 6
Length of query: 221
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 124
Effective length of database: 11,971,043
Effective search space: 1484409332
Effective search space used: 1484409332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)