Os01g0698900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nascent polypeptide-associated complex alpha subunit (NAC-alpha) (Alpha-NAC) (Hom s 2.02).
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Os01g0698900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nascent polypeptide-associated complex alpha subunit (NAC-alpha) (Alpha-NAC) (Hom s 2.02).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.32 | 0.447 | 12.1 | -0.878 | 1.61 | 0.574 | -0.826 | 0.295 | -0.944 | 21.8 | 25.2 | 319 | -- | -- |
| 90.57 | 0.443 | 12.1 | -0.943 | 1.62 | 0.588 | -0.778 | -- | -0.962 | 21.8 | 25.23 | 319 | -- | -- |
| 92.89 | 0.449 | 12.1 | -0.85 | 1.62 | 0.585 | -- | 0.274 | -0.946 | 21.8 | 25.3 | 319 | -- | -- |
| 92.99 | 0.449 | 12.1 | -0.93 | 1.61 | 0.601 | -- | -- | -0.972 | 21.8 | 25.3 | 319 | -- | -- |
| 195.98 | 0.652 | 12.2 | -0.982 | -- | 1.4 | -- | -0.308 | -1.17 | -- | 25.6 | 634 | -- | -- |
| 106.29 | 0.483 | 12.1 | -0.786 | 1.82 | -- | -0.817 | -- | -0.716 | 21 | -- | -- | -- | -- |
| 108.6 | 0.488 | 12.1 | -0.757 | 1.83 | -- | -- | -- | -0.715 | 21 | -- | -- | -- | -- |
| 194.97 | 0.65 | 12.2 | -1.17 | -- | 1.46 | -- | -- | -1.24 | -- | 25.7 | 635 | -- | -- |
| 114.4 | 0.498 | 12.1 | -- | 1.66 | 0.445 | -- | -- | -0.806 | 21.6 | 25.52 | 288 | -- | -- |
| 300.04 | 0.809 | 12 | -0.755 | -- | -- | -- | -- | -0.726 | -- | -- | -- | -- | -- |
| 123.72 | 0.52 | 12.1 | -- | 1.83 | -- | -- | -- | -0.63 | 21 | -- | -- | -- | -- |
| 229.96 | 0.706 | 12.1 | -- | -- | 1.28 | -- | -- | -1.06 | -- | 25.61 | 619 | -- | -- |
| 315.07 | 0.829 | 12 | -- | -- | -- | -- | -- | -0.642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.35 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 86.18 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 5 | 86.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 7 | 86.81 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 16 |
| 10 | 87.11 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 17 | 87.33 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 15 |
| 23 | 87.43 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 46 | 88.00 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 52 | 88.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 54 | 88.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 64 | 88.27 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 70 | 88.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 72 | 88.39 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 93 | 88.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 95 | 88.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 127 | 88.90 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 146 | 89.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 198 | 89.42 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 208 | 89.51 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 210 | 89.51 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 223 | 89.59 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 224 | 89.59 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 239 | 89.73 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 243 | 89.77 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 8 |
| 244 | 89.77 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 248 | 89.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 266 | 89.92 | radiation | 30 | 270 | > th | dose dependent | sin | 11 | NA |
| 286 | 90.00 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 290 | 90.02 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 298 | 90.07 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 356 | 90.27 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 382 | 90.39 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 383 | 90.39 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 518 | 90.85 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 22 |
| 538 | 90.87 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 20 |
| 543 | 90.88 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 18 |
| 626 | 91.10 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 646 | 91.14 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 660 | 91.20 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 19 |
| 663 | 91.21 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 2 |
| 694 | 91.25 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 715 | 91.31 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 779 | 91.39 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 795 | 91.44 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 885 | 91.65 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 939 | 91.75 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 940 | 91.75 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 992 | 91.89 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 12 |