Os03g0121700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).
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Os03g0121700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.59 | 0.398 | 12.7 | -0.62 | 1.55 | 0.542 | -0.439 | 0.327 | -0.888 | 21.5 | 25.5 | 288 | -- | -- |
| 71.89 | 0.395 | 12.8 | -0.686 | 1.55 | 0.543 | -0.384 | -- | -0.905 | 21.4 | 25.58 | 288 | -- | -- |
| 72.29 | 0.396 | 12.8 | -0.621 | 1.55 | 0.55 | -- | 0.27 | -0.894 | 21.5 | 25.5 | 288 | -- | -- |
| 72.47 | 0.396 | 12.8 | -0.695 | 1.54 | 0.566 | -- | -- | -0.921 | 21.5 | 25.52 | 288 | -- | -- |
| 159.36 | 0.588 | 12.8 | -1.05 | -- | 1.48 | -- | -0.902 | -1.17 | -- | 25.8 | 623 | -- | -- |
| 86.2 | 0.435 | 12.7 | -0.549 | 1.77 | -- | -0.435 | -- | -0.679 | 20.7 | -- | -- | -- | -- |
| 86.82 | 0.436 | 12.7 | -0.535 | 1.77 | -- | -- | -- | -0.679 | 20.7 | -- | -- | -- | -- |
| 160.54 | 0.59 | 12.8 | -0.962 | -- | 1.45 | -- | -- | -1.15 | -- | 25.79 | 623 | -- | -- |
| 84.62 | 0.428 | 12.7 | -- | 1.58 | 0.468 | -- | -- | -0.803 | 21.3 | 25.5 | 288 | -- | -- |
| 263.52 | 0.759 | 12.7 | -0.539 | -- | -- | -- | -- | -0.694 | -- | -- | -- | -- | -- |
| 94.36 | 0.454 | 12.7 | -- | 1.77 | -- | -- | -- | -0.619 | 20.6 | -- | -- | -- | -- |
| 183.66 | 0.631 | 12.7 | -- | -- | 1.29 | -- | -- | -1.01 | -- | 25.75 | 592 | -- | -- |
| 271.18 | 0.769 | 12.7 | -- | -- | -- | -- | -- | -0.634 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.09 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 67.19 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 12 | 68.70 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 15 | 68.73 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 16 | 68.76 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 22 | 68.95 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 33 | 69.34 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 38 | 69.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 39 | 69.53 | radiation | 30.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 45 | 69.61 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 55 | 69.71 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 64 | 69.80 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 77 | 69.93 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 78 | 69.94 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 87 | 70.06 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 107 | 70.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 174 | 70.52 | radiation | 40.0 | 270 | > th | dose independent | sin | 11 | NA |
| 192 | 70.64 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 193 | 70.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 210 | 70.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 240 | 70.97 | radiation | 40.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 277 | 71.07 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 308 | 71.15 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 318 | 71.21 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 345 | 71.40 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 352 | 71.43 | radiation | 40.0 | 270 | > th | dose independent | rect. | 14 | 21 |
| 373 | 71.47 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 380 | 71.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 411 | 71.56 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 434 | 71.67 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 443 | 71.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 454 | 71.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 455 | 71.77 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 456 | 71.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 469 | 71.82 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 482 | 71.88 | temperature | 30.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 489 | 71.91 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 496 | 71.92 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 505 | 71.96 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 508 | 71.97 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 550 | 72.09 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 598 | 72.20 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 607 | 72.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 635 | 72.27 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 17 |
| 659 | 72.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 671 | 72.34 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 742 | 72.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 812 | 72.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 15 |
| 820 | 72.55 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 910 | 72.66 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 939 | 72.68 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 985 | 72.72 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |