Os05g0373700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).
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Os05g0373700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.16 | 0.413 | 11.5 | -0.536 | 1.12 | -0.399 | 0.684 | -2.67 | -0.407 | 15.8 | 21.5 | 3190 | -- | -- |
| 84.17 | 0.427 | 11.4 | 0.207 | 1 | -0.449 | 0.615 | -- | -0.152 | 16.2 | 24.73 | 1053 | -- | -- |
| 78.53 | 0.413 | 11.5 | -0.524 | 1.12 | -0.39 | -- | -2.66 | -0.404 | 15.7 | 21.48 | 3162 | -- | -- |
| 85.3 | 0.43 | 11.4 | 0.21 | 1.03 | -0.443 | -- | -- | -0.132 | 16.1 | 24.7 | 1062 | -- | -- |
| 140.79 | 0.553 | 11.5 | -0.656 | -- | -0.451 | -- | -2.67 | -0.408 | -- | 24.18 | 2638 | -- | -- |
| 90.66 | 0.446 | 11.4 | 0.0626 | 1.11 | -- | 0.634 | -- | -0.293 | 15.8 | -- | -- | -- | -- |
| 91.86 | 0.449 | 11.4 | 0.072 | 1.12 | -- | -- | -- | -0.289 | 15.7 | -- | -- | -- | -- |
| 139.9 | 0.551 | 11.4 | 0.237 | -- | -0.733 | -- | -- | -0.0903 | -- | 25 | 1113 | -- | -- |
| 86.5 | 0.433 | 11.4 | -- | 1.03 | -0.424 | -- | -- | -0.138 | 16.1 | 24.8 | 1060 | -- | -- |
| 160.8 | 0.593 | 11.4 | 0.0256 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 92 | 0.449 | 11.4 | -- | 1.12 | -- | -- | -- | -0.297 | 15.7 | -- | -- | -- | -- |
| 141.31 | 0.554 | 11.4 | -- | -- | -0.725 | -- | -- | -0.0881 | -- | 24.91 | 1114 | -- | -- |
| 160.81 | 0.592 | 11.4 | -- | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.86 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 2 | 76.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 3 | 76.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 5 | 76.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 7 | 76.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 9 | 77.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 19 | 77.27 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 28 | 77.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 155 | 77.86 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 270 | 78.23 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 323 | 78.35 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 11 |
| 382 | 78.51 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 428 | 78.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 473 | 78.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 587 | 78.93 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 742 | 79.18 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 775 | 79.23 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 816 | 79.30 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 12 |
| 834 | 79.32 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 880 | 79.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 14 |