Os01g0938900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).
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Os01g0938900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.98 | 0.22 | 13.4 | 0.227 | 0.651 | -0.397 | 0.316 | 1.03 | 0.0799 | 18.8 | 19.1 | 3938 | -- | -- |
| 23.46 | 0.226 | 13.4 | 0.223 | 0.644 | -0.688 | 0.326 | -- | 0.101 | 18.8 | 18.5 | 9844 | -- | -- |
| 21.72 | 0.217 | 13.5 | 0.214 | 0.66 | -0.365 | -- | 1.19 | 0.0766 | 18.8 | 19.4 | 2770 | -- | -- |
| 23.1 | 0.224 | 13.4 | 0.342 | 0.65 | -0.622 | -- | -- | 0.103 | 18.8 | 18.8 | 4077 | -- | -- |
| 44 | 0.309 | 13.4 | 0.219 | -- | -0.419 | -- | 1 | 0.0766 | -- | 19.03 | 3539 | -- | -- |
| 29.22 | 0.253 | 13.4 | 0.69 | 0.645 | -- | 0.377 | -- | 0.247 | 18.9 | -- | -- | -- | -- |
| 29.58 | 0.255 | 13.4 | 0.684 | 0.646 | -- | -- | -- | 0.248 | 18.9 | -- | -- | -- | -- |
| 44.98 | 0.312 | 13.4 | 0.343 | -- | -0.664 | -- | -- | 0.103 | -- | 19 | 3480 | -- | -- |
| 23.64 | 0.226 | 13.4 | -- | 0.647 | -0.723 | -- | -- | 0.0431 | 18.8 | 16.98 | 24250 | -- | -- |
| 51.45 | 0.335 | 13.4 | 0.67 | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
| 41.91 | 0.303 | 13.4 | -- | 0.638 | -- | -- | -- | 0.172 | 18.9 | -- | -- | -- | -- |
| 45.33 | 0.314 | 13.4 | -- | -- | -0.777 | -- | -- | 0.0479 | -- | 16.4 | 24829 | -- | -- |
| 63.29 | 0.371 | 13.4 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 3 | 21.32 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 21.38 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 11 | 21.40 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 39 | 21.54 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 42 | 21.54 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 44 | 21.55 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 65 | 21.63 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 72 | 21.66 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 86 | 21.70 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 96 | 21.72 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 99 | 21.72 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 116 | 21.73 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 117 | 21.74 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 131 | 21.75 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 148 | 21.76 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 149 | 21.76 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 153 | 21.77 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 162 | 21.78 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 189 | 21.79 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 195 | 21.80 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 198 | 21.81 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 199 | 21.81 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 204 | 21.81 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 213 | 21.82 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 235 | 21.84 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 243 | 21.84 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 259 | 21.85 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 266 | 21.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 267 | 21.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 268 | 21.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 278 | 21.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 295 | 21.87 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 307 | 21.88 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 321 | 21.88 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 332 | 21.89 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 339 | 21.90 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 343 | 21.90 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 348 | 21.90 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 349 | 21.90 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 403 | 21.94 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 423 | 21.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 429 | 21.95 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 431 | 21.95 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 487 | 21.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 508 | 21.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 7 |
| 510 | 21.99 | humidity | 70.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 537 | 22.00 | humidity | 70.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 574 | 22.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 589 | 22.01 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 592 | 22.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 660 | 22.03 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 664 | 22.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 730 | 22.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 787 | 22.07 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 792 | 22.07 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 820 | 22.08 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 901 | 22.09 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 927 | 22.10 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 5 |