BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0938900 Os01g0938900|AK101971
(202 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0938900 Similar to Nascent polypeptide-associated comp... 294 4e-80
AK070627 294 4e-80
Os05g0373700 Similar to Nascent polypeptide-associated comp... 244 2e-65
Os03g0121700 Similar to Nascent polypeptide-associated comp... 167 4e-42
AK110559 138 3e-33
Os01g0698900 Similar to Nascent polypeptide-associated comp... 95 4e-20
>Os01g0938900 Similar to Nascent polypeptide-associated complex alpha
subunit-like protein 3 (NAC-alpha-like protein 3)
(Alpha-NAC-like protein 3)
Length = 202
Score = 294 bits (752), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 156/202 (77%)
Query: 1 MTAAETQEELLRKHLEEQKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGXXXX 60
MTAAETQEELLRKHLEEQKI ASG
Sbjct: 1 MTAAETQEELLRKHLEEQKIEGDEPILEDDDDDEDDDDDEDDKDDDVEGAGGDASGRSKQ 60
Query: 61 XXXXXXXXXAMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE 120
AMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE
Sbjct: 61 SRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE 120
Query: 121 DLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRS 180
DLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRS
Sbjct: 121 DLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRS 180
Query: 181 RAVKALKAANGDIVTAIMELTN 202
RAVKALKAANGDIVTAIMELTN
Sbjct: 181 RAVKALKAANGDIVTAIMELTN 202
>AK070627
Length = 202
Score = 294 bits (752), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 156/202 (77%)
Query: 1 MTAAETQEELLRKHLEEQKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGXXXX 60
MTAAETQEELLRKHLEEQKI ASG
Sbjct: 1 MTAAETQEELLRKHLEEQKIEGDEPILEDDDDDEDDDDDEDDKDDDVEGAGGDASGRSKQ 60
Query: 61 XXXXXXXXXAMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE 120
AMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE
Sbjct: 61 SRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIE 120
Query: 121 DLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRS 180
DLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRS
Sbjct: 121 DLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRS 180
Query: 181 RAVKALKAANGDIVTAIMELTN 202
RAVKALKAANGDIVTAIMELTN
Sbjct: 181 RAVKALKAANGDIVTAIMELTN 202
>Os05g0373700 Similar to Nascent polypeptide-associated complex alpha
subunit-like protein 3 (NAC-alpha-like protein 3)
(Alpha-NAC-like protein 3)
Length = 205
Score = 244 bits (624), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 145/205 (70%), Gaps = 3/205 (1%)
Query: 1 MTAAET--QEELLRKHLEEQKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGXX 58
MTAAE QEE LR +EEQK+ ASG
Sbjct: 1 MTAAEIGKQEEELRAQIEEQKLNEGDEPVVVEDDDDDEDDDDEDDKDDDDAEGGDASGRS 60
Query: 59 XXXXXXXXXXXAMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAK 118
AM KLGMK+ITGVSRVT+KKSKNILFVISKPDVFKSP SDTYVIFGEAK
Sbjct: 61 KQSRSEKKSRKAMVKLGMKSITGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAK 120
Query: 119 IEDLSSQLQTQAAEQFKAPDLSNVISKAEPSAAAQ-DDEEVDESGVEPKDIELVMTQATV 177
IEDLSSQLQTQAAEQFKAPDLS+++SK E S AAQ DDE VDE+GVEPKDIELVMTQATV
Sbjct: 121 IEDLSSQLQTQAAEQFKAPDLSSMLSKPEASTAAQEDDEAVDETGVEPKDIELVMTQATV 180
Query: 178 SRSRAVKALKAANGDIVTAIMELTN 202
SRS+AVKALKAANGDIVTAIMELT
Sbjct: 181 SRSKAVKALKAANGDIVTAIMELTT 205
>Os03g0121700 Similar to Nascent polypeptide-associated complex alpha
subunit-like protein 3 (NAC-alpha-like protein 3)
(Alpha-NAC-like protein 3)
Length = 221
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 120/134 (89%), Gaps = 2/134 (1%)
Query: 70 AMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQ 129
AM KLGMK +TGVSR+TIK++KNILFV+SKPDVFKSP S+TYVIFGEAKIEDLSSQLQ Q
Sbjct: 87 AMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDLSSQLQAQ 146
Query: 130 AAEQFKAPDLSNVISK--AEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALK 187
AA+QF+ DLS V+SK A +A A ++EEVDE+G+EP+DI+LVMTQA+VSR++AVKALK
Sbjct: 147 AAQQFRMQDLSKVMSKPDAAAAAPADEEEEVDETGIEPRDIDLVMTQASVSRAKAVKALK 206
Query: 188 AANGDIVTAIMELT 201
A +GDIV+AIMELT
Sbjct: 207 AHDGDIVSAIMELT 220
>AK110559
Length = 236
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 100/144 (69%), Gaps = 13/144 (9%)
Query: 70 AMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQ 129
AMQKLGMK + G+ RV IKK+KNILFVISKPDVFKSP SDTY+IFGEAKIED++SQLQ
Sbjct: 93 AMQKLGMKQVPGIVRVAIKKAKNILFVISKPDVFKSPASDTYIIFGEAKIEDINSQLQAN 152
Query: 130 AAEQFKAPDLSNVISKAEPSAAA------------QDDEEVDESGVEPKDIELVMTQATV 177
AAEQFK + + A P+AA +E VDE+G++ +I VM+Q V
Sbjct: 153 AAEQFKHDAPAGMPDAAAPAAAGGAGAGSLLNTPIDPNEVVDETGLDKDEIATVMSQTNV 212
Query: 178 SRSRAVKALKAANGDIVTAIMELT 201
SR+ AVKAL+ G+IV AI+ LT
Sbjct: 213 SRAHAVKALR-KTGNIVDAILALT 235
>Os01g0698900 Similar to Nascent polypeptide-associated complex alpha subunit
(NAC-alpha) (Alpha-NAC) (Hom s 2.02)
Length = 458
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
Query: 70 AMQKLGMKTITGVSRVTIKKSKNILFVISKP-DVFKSPNSDTYVIFGEAKIEDLSSQLQT 128
AM KLGMK +TGVSR+TI+++KNILFV+SKP DVFKSP S++YVIFGEAKIEDLSSQLQ
Sbjct: 339 AMMKLGMKPVTGVSRITIERAKNILFVVSKPHDVFKSPTSESYVIFGEAKIEDLSSQLQA 398
Query: 129 QAAEQFKAPDLSNVI 143
QAA+QF+ DLS I
Sbjct: 399 QAAQQFRMQDLSKGI 413
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.123 0.310
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,029,986
Number of extensions: 124290
Number of successful extensions: 565
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 6
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)