BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0113900 Os03g0113900|AK107900
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0113900  Protein of unknown function DUF584 family protein   195   1e-50
Os12g0156000  Protein of unknown function DUF584 family protein    77   1e-14
Os11g0154300  Protein of unknown function DUF584 family protein    74   6e-14
Os01g0862600  Protein of unknown function DUF584 family protein    67   1e-11
Os10g0413600                                                       65   5e-11
Os10g0415172                                                       64   6e-11

>Os03g0113900 Protein of unknown function DUF584 family protein
          Length = 197

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 112/197 (56%)

Query: 1   MAMPRSPGAGSLRFLGLLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCCXXXXXXX 60
           MAMPRSPGAGSLRFLGLLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCC       
Sbjct: 1   MAMPRSPGAGSLRFLGLLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCCPAPPHPE 60

Query: 61  XXXXXXXXXHTVPQSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                    HTVPQSF                                            
Sbjct: 61  GPPRAPRRAHTVPQSFGLSSLLANGGRGGGSDDGRQDGVAVPVRAAAAPGGGAAAPRRSA 120

Query: 121 XXXXXMWPGKXXXXXXXXXXXXXXXXXXXXMVPPHVVAARRHARSSSVLEGAGRTLKGRD 180
                MWPGK                    MVPPHVVAARRHARSSSVLEGAGRTLKGRD
Sbjct: 121 PVRVPMWPGKGAAANNVVGGEESDDNEDDEMVPPHVVAARRHARSSSVLEGAGRTLKGRD 180

Query: 181 LRRVRNAVLRQTGFLDL 197
           LRRVRNAVLRQTGFLDL
Sbjct: 181 LRRVRNAVLRQTGFLDL 197



>Os12g0156000 Protein of unknown function DUF584 family protein
          Length = 165

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 151 MVPPHVVAARRHARSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
           +VPPH V ARR A  SSVLEGAGRTLKGRDLRRVRNAVLR+TGFLD
Sbjct: 120 VVPPHEVVARRAAAHSSVLEGAGRTLKGRDLRRVRNAVLRRTGFLD 165



>Os11g0154300 Protein of unknown function DUF584 family protein
          Length = 171

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 40/46 (86%)

Query: 151 MVPPHVVAARRHARSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
           MVPPH + ARR A  SSVLEG+GRTLKGRDL RVRNAVLR+TGFLD
Sbjct: 126 MVPPHEIVARRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171



>Os01g0862600 Protein of unknown function DUF584 family protein
          Length = 219

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 5/51 (9%)

Query: 151 MVPPHVVAARRHARSS-----SVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
           M+PPH + AR  AR S     SVLEGAGRTLKGRDLR+VRNAV R+TGFLD
Sbjct: 169 MLPPHEMVARARARDSPMTTFSVLEGAGRTLKGRDLRQVRNAVWRKTGFLD 219



>Os10g0413600 
          Length = 252

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 8/54 (14%)

Query: 151 MVPPHVVAARRHA--------RSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
           M+PPH + AR  A        + SS+LEG GRTLKGRDLRRVR+AVLRQTGFLD
Sbjct: 199 MLPPHEMVARASAGGGFGGPVKPSSMLEGVGRTLKGRDLRRVRDAVLRQTGFLD 252



>Os10g0415172 
          Length = 142

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 8/54 (14%)

Query: 151 MVPPHVVAARRHA--------RSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
           M+PPH + AR  A        + SS+LEG GRTLKGRDLRRVR+AVLRQTGFLD
Sbjct: 89  MLPPHEMVARASAGGGFGGPVKPSSMLEGVGRTLKGRDLRRVRDAVLRQTGFLD 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,830,747
Number of extensions: 171840
Number of successful extensions: 516
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 8
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)