BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0107300 Os03g0107300|AK101092
(472 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0107300 Citrate transporter family protein 865 0.0
Os10g0547500 Citrate transporter family protein 700 0.0
Os02g0822100 Citrate transporter family protein 478 e-135
Os03g0147400 Citrate transporter family protein 301 1e-81
Os10g0447900 Citrate transporter family protein 196 5e-50
>Os03g0107300 Citrate transporter family protein
Length = 472
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/472 (91%), Positives = 433/472 (91%)
Query: 1 MSELASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYA 60
MSELASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYA
Sbjct: 1 MSELASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYA 60
Query: 61 SIDLPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTN 120
SIDLPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTN
Sbjct: 61 SIDLPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTN 120
Query: 121 DTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPK 180
DTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPK
Sbjct: 121 DTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPK 180
Query: 181 FLMGILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDGKQMEAVEEGRSPASAKSTPQLN 240
FLMGILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDGKQMEAVEEGRSPASAKSTPQLN
Sbjct: 181 FLMGILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDGKQMEAVEEGRSPASAKSTPQLN 240
Query: 241 GNGNTMMSLEMSENITTKHPWFMQCTEARRKLFLKSFXXXXXXXXXXXXXXXLNMSWTAI 300
GNGNTMMSLEMSENITTKHPWFMQCTEARRKLFLKSF LNMSWTAI
Sbjct: 241 GNGNTMMSLEMSENITTKHPWFMQCTEARRKLFLKSFAYVVTVGMVVAYMVGLNMSWTAI 300
Query: 301 TTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMAPYSKXXX 360
TTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMAPYSK
Sbjct: 301 TTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMAPYSKVNS 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXPTVLLMGDEVAKAAALISPAAVTTSWLLLAWVSTVAGNL 420
PTVLLMGDEVAKAAALISPAAVTTSWLLLAWVSTVAGNL
Sbjct: 361 VGGISVLSVIILLLSNLASNVPTVLLMGDEVAKAAALISPAAVTTSWLLLAWVSTVAGNL 420
Query: 421 SLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLIGKI 472
SLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLIGKI
Sbjct: 421 SLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLIGKI 472
>Os10g0547500 Citrate transporter family protein
Length = 485
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/482 (74%), Positives = 393/482 (81%), Gaps = 14/482 (2%)
Query: 4 LASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYASID 63
LAS PKV +GS+AF VFWM+AVFPSVPFLPIGRTAG+LL AVLM++FHVIS DDAYASID
Sbjct: 3 LASLPKVVMGSVAFGVFWMLAVFPSVPFLPIGRTAGALLGAVLMIVFHVISADDAYASID 62
Query: 64 LPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTNDTC 123
LPILGLLFATMVVG YL+NAGMF+HLGRLLAW+SQGGRDLMCRVCVVTALASALFTNDTC
Sbjct: 63 LPILGLLFATMVVGGYLKNAGMFRHLGRLLAWRSQGGRDLMCRVCVVTALASALFTNDTC 122
Query: 124 CVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPKFLM 183
CVVLTEFVLELAAERNLPAKPFLLALA+SANIGS+ATPIGNPQNLVIAFNSKI+F FL+
Sbjct: 123 CVVLTEFVLELAAERNLPAKPFLLALATSANIGSSATPIGNPQNLVIAFNSKISFISFLL 182
Query: 184 GILPAMLVGMAVNMVMLLCMYWRELGGGA---ELSVDGKQMEAVEEGRSPASAKSTPQLN 240
GILPAML GM +NM+MLLCMYW+EL GGA + GKQMEA+EEGR A + + +
Sbjct: 183 GILPAMLAGMGINMLMLLCMYWKELDGGACSPDEVAAGKQMEAIEEGRRTA-LNNNKKDD 241
Query: 241 GNGNTMMSLE----------MSENITTKHPWFMQCTEARRKLFLKSFXXXXXXXXXXXXX 290
G+ T S E MSENI+TKH WFMQC+E RRKLFLKSF
Sbjct: 242 GDAATPASPEDDDGGDAESMMSENISTKHRWFMQCSEHRRKLFLKSFAYVVTVGMLVAYM 301
Query: 291 XXLNMSWTAITTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWD 350
LNMSWTAITTA+ALVVVDFRDAEPCLD VSYSLLVFFSGMF+TVSGFNKTGLPGAIW+
Sbjct: 302 LGLNMSWTAITTAIALVVVDFRDAEPCLDKVSYSLLVFFSGMFVTVSGFNKTGLPGAIWN 361
Query: 351 FMAPYSKXXXXXXXXXXXXXXXXXXXXXXXXPTVLLMGDEVAKAAALISPAAVTTSWLLL 410
MAPYSK PTVLLMGDEVA AAA ISPAAVT SWLLL
Sbjct: 362 VMAPYSKINHVTGVTVLSVIILLLSNLASNVPTVLLMGDEVAAAAATISPAAVTRSWLLL 421
Query: 411 AWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLIG 470
AWVSTVAGNLSLLGSAANLIVCEQARRA RNAYDLTFW H++FG+PSTL+VTA+GIPLIG
Sbjct: 422 AWVSTVAGNLSLLGSAANLIVCEQARRATRNAYDLTFWNHVIFGLPSTLVVTAIGIPLIG 481
Query: 471 KI 472
KI
Sbjct: 482 KI 483
>Os02g0822100 Citrate transporter family protein
Length = 530
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/520 (52%), Positives = 328/520 (63%), Gaps = 59/520 (11%)
Query: 9 KVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYASIDLPILG 68
KVALG+ AF +FW++AVFP+VPFLPIGRTAGSLL A+LMV+F V+S D+AYA++DLPILG
Sbjct: 8 KVALGTAAFGIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVLFGVMSADEAYAAVDLPILG 67
Query: 69 LLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTNDTCCVVLT 128
LLF TMVV YL A MFKHLGRLL+W+SQGG+DL+ R CVV ALASALFTNDTCCVVLT
Sbjct: 68 LLFGTMVVSVYLERADMFKHLGRLLSWRSQGGKDLLVRTCVVAALASALFTNDTCCVVLT 127
Query: 129 EFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPKFLMGILPA 188
EF+L++A + NLP KPFLLALASSANIGSAATPIGNPQNLVIA S I+F +F+ GILPA
Sbjct: 128 EFILKIARQNNLPPKPFLLALASSANIGSAATPIGNPQNLVIAVQSGISFGQFVFGILPA 187
Query: 189 MLVGMAVNMVMLLCMYWRELGGG------AELSVDGKQMEAVEEGR-------------- 228
LVG VN +LLC+YWR L A + D + E V R
Sbjct: 188 TLVGAVVNAAILLCLYWRHLSDEKCVEVVAPVPTDVVEEEDVTSHRFSPATMSHPRSSSH 247
Query: 229 -----SPASAKSTPQL-------------NGNGNTMMSLEMSENITTKHP---------- 260
P S+ S+P NG+ N + + H
Sbjct: 248 HHHHQQPGSSLSSPDCEVFEPVKPVPVTSNGDSNNKPDAADAAVVVGIHQRRGGVGGGVR 307
Query: 261 --------WFMQCTEAR---RKLFLKSFXXXXXXXXXXXXXXXLNMSWTAITTALALVVV 309
W + EA + K+ LNMSW+AIT ALAL+V+
Sbjct: 308 MKEEHAFRWVEEKEEAMEQWKSTVWKTGVYVITLSMLVALLLGLNMSWSAITAALALIVL 367
Query: 310 DFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMAPYSKXXXXXXXXXXXX 369
DF+DA PCL+ VSY LL+FF GMFITV GFNKTG+P A W+FM PY++
Sbjct: 368 DFKDARPCLEKVSYPLLLFFCGMFITVDGFNKTGIPSAFWEFMEPYARIDTPTGIVILAL 427
Query: 370 XXXXXXXXXXXXPTVLLMGDEVAKAAALISPAAVTTSWLLLAWVSTVAGNLSLLGSAANL 429
PTVLL+G VA +AA ISPAA T +WL+LAWVSTVAGNLSLLGSAANL
Sbjct: 428 VILLLSNVASNVPTVLLLGARVAASAAAISPAAETNAWLILAWVSTVAGNLSLLGSAANL 487
Query: 430 IVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLI 469
IVCEQARR+ + Y L+F+ H+ FG P+TLIVT +G+ LI
Sbjct: 488 IVCEQARRSEQYGYTLSFFSHLQFGFPATLIVTGIGLLLI 527
>Os03g0147400 Citrate transporter family protein
Length = 557
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/262 (56%), Positives = 193/262 (73%), Gaps = 12/262 (4%)
Query: 4 LASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYASID 63
LA KV LG +AF +FW++AVFP+VPF+P+GRTAGSLL A+LMV+F VISP+DAYA+ID
Sbjct: 3 LAGTSKVVLGCVAFGIFWVLAVFPTVPFMPVGRTAGSLLGAMLMVLFRVISPEDAYAAID 62
Query: 64 LPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTNDTC 123
LPI+GLLF TMVV +L A MFK+LG LL+WKS+G +DL+ RVC+V+A+ASALFTNDTC
Sbjct: 63 LPIIGLLFGTMVVSIFLERADMFKYLGNLLSWKSRGSKDLLFRVCIVSAIASALFTNDTC 122
Query: 124 CVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPKFLM 183
CVVLTEF+L++A + NLP +PFLLALA+S+NIGSAATPIGNPQNLVIA S I+F +FL+
Sbjct: 123 CVVLTEFILKVARQNNLPPQPFLLALATSSNIGSAATPIGNPQNLVIAVESGISFGQFLL 182
Query: 184 GILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDGKQMEAVEEGRSPASAKSTPQLNGNG 243
G+ PAM+VG+ N +LLC +W+ L +E +EG PA +
Sbjct: 183 GVFPAMIVGVLTNAAILLCYFWKYL-----------SVEKDQEGGQPAGPEVVADDEVTS 231
Query: 244 NTMMSLEMSENITTKHPWFMQC 265
+ MS ++++ +P M C
Sbjct: 232 HRFTPARMS-HVSSLNPDDMDC 252
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 125/177 (70%)
Query: 293 LNMSWTAITTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFM 352
LNMSWTAIT AL L+ +DF DA+ CL+ VSYSLL+FF GMFITV GFNKTG+P +W+ +
Sbjct: 378 LNMSWTAITAALVLLALDFTDAQACLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELV 437
Query: 353 APYSKXXXXXXXXXXXXXXXXXXXXXXXXPTVLLMGDEVAKAAALISPAAVTTSWLLLAW 412
PYS+ PTVLL+G VA +AA IS + +WL+LAW
Sbjct: 438 EPYSRIDSAKGVALLAVVILILSNVASNVPTVLLLGTRVAASAAAISHDSERKAWLILAW 497
Query: 413 VSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLI 469
VSTVAGNL+LLGSAANLIVCEQARRA Y+L+FW H+ FGVPST++VTA+G+ ++
Sbjct: 498 VSTVAGNLTLLGSAANLIVCEQARRAQFFGYNLSFWSHLRFGVPSTIVVTAIGLLIV 554
>Os10g0447900 Citrate transporter family protein
Length = 327
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 126/176 (71%)
Query: 294 NMSWTAITTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMA 353
NMSWTAIT AL L+ +DF DA+ CL+ VSYSLL+FF GMFITV GFNKTG+P +W+ +
Sbjct: 149 NMSWTAITAALILLALDFTDAQACLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELVE 208
Query: 354 PYSKXXXXXXXXXXXXXXXXXXXXXXXXPTVLLMGDEVAKAAALISPAAVTTSWLLLAWV 413
PY++ PTVLL+G VA +AA ISPA+ +WL+LAWV
Sbjct: 209 PYARIDSPKGVVLLAIVILVLSNVASNVPTVLLLGTRVAASAAAISPASEKKAWLILAWV 268
Query: 414 STVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLI 469
STVAGNL+LLGSAANLIVCEQARRA Y+LTFW H+ FGVPST+IVTA+G+ ++
Sbjct: 269 STVAGNLTLLGSAANLIVCEQARRAQFFGYNLTFWSHLRFGVPSTIIVTAIGLLIV 324
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,937,077
Number of extensions: 516727
Number of successful extensions: 1775
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1766
Number of HSP's successfully gapped: 7
Length of query: 472
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 367
Effective length of database: 11,553,331
Effective search space: 4240072477
Effective search space used: 4240072477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)