BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0105800 Os03g0105800|AK066875
(749 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0105800 Conserved hypothetical protein 1455 0.0
Os10g0550700 Conserved hypothetical protein 128 1e-29
Os03g0139200 Cytochrome c region domain containing protein 92 1e-18
Os03g0267600 Hypothetical protein 84 4e-16
>Os03g0105800 Conserved hypothetical protein
Length = 749
Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/749 (96%), Positives = 721/749 (96%)
Query: 1 MRQDVASKCDSRSRSGAAPEIMRSPRRTIGENGYRDTRHHQLKCSDGNLGELRVESIPNF 60
MRQDVASKCDSRSRSGAAPEIMRSPRRTIGENGYRDTRHHQLKCSDGNLGELRVESIPNF
Sbjct: 1 MRQDVASKCDSRSRSGAAPEIMRSPRRTIGENGYRDTRHHQLKCSDGNLGELRVESIPNF 60
Query: 61 HCKSLPTRSRKTNAEDSIVGKRGSMYQSSSEISMIRKLHEGRRKKIDSALDGDAFLSFEI 120
HCKSLPTRSRKTNAEDSIVGKRGSMYQSSSEISMIRKLHEGRRKKIDSALDGDAFLSFEI
Sbjct: 61 HCKSLPTRSRKTNAEDSIVGKRGSMYQSSSEISMIRKLHEGRRKKIDSALDGDAFLSFEI 120
Query: 121 VDSSSQPSTSGAYLFSHQNRRSEAKSSVESRRIHRASRDFLDLSFRELPDENCRLDRPRM 180
VDSSSQPSTSGAYLFSHQNRRSEAKSSVESRRIHRASRDFLDLSFRELPDENCRLDRPRM
Sbjct: 121 VDSSSQPSTSGAYLFSHQNRRSEAKSSVESRRIHRASRDFLDLSFRELPDENCRLDRPRM 180
Query: 181 DCTLLKNDAGDGFLEISLEEEMTKGPCRNAAPQLIGGESSKGTEANCLQNKISVCPSENN 240
DCTLLKNDAGDGFLEISLEEEMTKGPCRNAAPQLIGGESSKGTEANCLQNKISVCPSENN
Sbjct: 181 DCTLLKNDAGDGFLEISLEEEMTKGPCRNAAPQLIGGESSKGTEANCLQNKISVCPSENN 240
Query: 241 CSQRERNSTNSLPESMSAKVSISDGTRPSESVRHGIENSTKVRSSPFKKILDPIMKSKSI 300
CSQRERNSTNSLPESMSAKVSISDGTRPSESVRHGIENSTKVRSSPFKKILDPIMKSKSI
Sbjct: 241 CSQRERNSTNSLPESMSAKVSISDGTRPSESVRHGIENSTKVRSSPFKKILDPIMKSKSI 300
Query: 301 RSPSLMEDSNHVTMPVNRKNCVXXXXXXXXXXXXEQSQSINCQLNGERQHTTNALSPAHL 360
RSPSLMEDSNHVTMPVNRKNCV EQSQSINCQLNGERQHTTNALSPAHL
Sbjct: 301 RSPSLMEDSNHVTMPVNRKNCVSRKSLLSDLSRSEQSQSINCQLNGERQHTTNALSPAHL 360
Query: 361 QAVLKLDTKNGIPVFEFCVKGPEESISARSWKTGNDLNWIYTFHSGGKRASATGRASKDG 420
QAVLKLDTKNGIPVFEFCVKGPEESISARSWKTGNDLNWIYTFHSGGKRASATGRASKDG
Sbjct: 361 QAVLKLDTKNGIPVFEFCVKGPEESISARSWKTGNDLNWIYTFHSGGKRASATGRASKDG 420
Query: 421 RWCSPPIVGQMQASSYLCSEVGKDGVLTNSVITEFVLYDIAHARQSFSAEEKTQCTETTQ 480
RWCSPPIVGQMQASSYLCSEVGKDGVLTNSVITEFVLYDIAHARQSFSAEEKTQCTETTQ
Sbjct: 421 RWCSPPIVGQMQASSYLCSEVGKDGVLTNSVITEFVLYDIAHARQSFSAEEKTQCTETTQ 480
Query: 481 STLSSAVEKSASGDCPQRINLMDQQNSARNNSDVSTSCPWSEEDLYPHLEIAATVIQVPF 540
STLSSAVEKSASGDCPQRINLMDQQNSARNNSDVSTSCPWSEEDLYPHLEIAATVIQVPF
Sbjct: 481 STLSSAVEKSASGDCPQRINLMDQQNSARNNSDVSTSCPWSEEDLYPHLEIAATVIQVPF 540
Query: 541 NRSKSKELKSGLSPGTVKVITPSGLHGLPNDDETSPSPLLDRWRYGGGCDCGGWDMACPI 600
NRSKSKELKSGLSPGTVKVITPSGLHGLPNDDETSPSPLLDRWRYGGGCDCGGWDMACPI
Sbjct: 541 NRSKSKELKSGLSPGTVKVITPSGLHGLPNDDETSPSPLLDRWRYGGGCDCGGWDMACPI 600
Query: 601 AVLGNAYDNNWANSVTKEGENPMELFVLSKNEQVVIFFEQGGKEELPALSIKGNEKGQLL 660
AVLGNAYDNNWANSVTKEGENPMELFVLSKNEQVVIFFEQGGKEELPALSIKGNEKGQLL
Sbjct: 601 AVLGNAYDNNWANSVTKEGENPMELFVLSKNEQVVIFFEQGGKEELPALSIKGNEKGQLL 660
Query: 661 VHFHARLSAMQAFSTCISLLHCSEASTAVSIEKGKHKLYSSSLKMLLEEEVSQLIEAVTA 720
VHFHARLSAMQAFSTCISLLHCSEASTAVSIEKGKHKLYSSSLKMLLEEEVSQLIEAVTA
Sbjct: 661 VHFHARLSAMQAFSTCISLLHCSEASTAVSIEKGKHKLYSSSLKMLLEEEVSQLIEAVTA 720
Query: 721 XXXXXXXXXXXXXXXXVVLDPPFSPMGRV 749
VVLDPPFSPMGRV
Sbjct: 721 EEKRKTKKRSEKPPRPVVLDPPFSPMGRV 749
>Os10g0550700 Conserved hypothetical protein
Length = 124
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Query: 638 FEQGGKEELPALSIKGNEKGQLLVHFHARLSAMQAFSTCISLLHCSEASTAVSIEKGKHK 697
+QG KE LPA+S+K G V FHARLSA+QAFS CI LLHCSE S+A+ IEK KHK
Sbjct: 11 LKQGNKEALPAISMKAVGNGHFSVDFHARLSALQAFSVCICLLHCSEVSSAIGIEKFKHK 70
Query: 698 LYSSSLKMLLEEEVSQLIEAVTAXXXXXXXXXXXXXXX--XVVLDPPFSPMGRV 749
LYSSSLKMLL++EV QLIE+VT +VLDPPFSPMGRV
Sbjct: 71 LYSSSLKMLLKDEVKQLIESVTTKENKKKKTKRRKEKTPPSIVLDPPFSPMGRV 124
>Os03g0139200 Cytochrome c region domain containing protein
Length = 582
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 93/383 (24%)
Query: 357 PAHLQA-VLKLDTKNGIPVFEFCVKGPEESISARSWKTGND---LNWIYTFHSGGK-RAS 411
P+ L A +L+ K+G+P FE + P +A K ++ L+++Y FHSG + R
Sbjct: 225 PSSLSAGLLQCIWKDGLPHFELSLDNPMAVYTANPTKAHDNDKPLDYVYLFHSGEQGRKD 284
Query: 412 ATGRASKDGRWCSPPIVGQMQASSYLCSEVGKDGVLTNSVITEFVLYDIA--HARQSFSA 469
G +S R +VG+M+ SS L K + S+ TEFVLY + RQ S+
Sbjct: 285 WLGNSSSVSR-----LVGKMKVSSSLVLNPDK----STSMETEFVLYGSPDDYLRQMQSS 335
Query: 470 EEKTQCTETTQSTLSSAVEKSASGDCPQRINLMDQQNSARNNSDVSTSCPWSEE------ 523
T+ + ++ ++ S P+ + + +S + D T P E+
Sbjct: 336 YGVTKGKGLAK-RVADIMKPSNLNSSPKHVWKFGKSSSQQ--IDEMTEIPEGEQCSAKES 392
Query: 524 --------DLYPHLEIAATVIQVPF-NRSKSKEL---------KSGLS------------ 553
DL + EIAA V++ R KS L K+G +
Sbjct: 393 VLKNLVADDLPTNQEIAAIVVRKQRRERRKSPVLGGWGLKFLEKAGATHPGSTEDGDVQN 452
Query: 554 ----PGTVKVITPSGLHGLPNDDETSPSPLLDRWRYGGGCDCGGWDMACPIAVLGNAYDN 609
G+V I P G HG SP+ L+ RWR GG CDCGGWD+ CPI VL N +
Sbjct: 453 KKNNAGSVSAIFPRGYHGGAASKNGSPASLIGRWRSGGRCDCGGWDIGCPIRVLQN---D 509
Query: 610 NWANSVTKEGENPMELFVLSKNEQVVIFFEQGGKEELPALSIKGNEKGQL---------- 659
S E + S++ + V LS+KG +KG +
Sbjct: 510 GCGTSPQAESQ--------SQDRKSV------------ELSVKGAKKGPMFRLVNITDDL 549
Query: 660 -LVHFHARLSAMQAFSTCISLLH 681
+++F + LS +Q FS I+++H
Sbjct: 550 HIIYFDSSLSPLQCFSAGIAIIH 572
>Os03g0267600 Hypothetical protein
Length = 899
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 114/504 (22%), Positives = 189/504 (37%), Gaps = 101/504 (20%)
Query: 283 RSSPFKKILDPIMKSKSIRSPSLMEDSN----HVTMPVNRKNCVXXXXXXXXXXXXEQSQ 338
R SP +++LDPI+K + + ++ S H+ +++++
Sbjct: 460 RRSPLRRMLDPILKPRQSSTSGPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSVDS 519
Query: 339 SI--NCQ-----------LNGERQHTTNALSPAHLQAVLKLDTKNGIPVFEFCVKGP--E 383
+ NC+ LN ER + S A+L+L KNG+P F
Sbjct: 520 VVNSNCRTETNTNQPPQVLNSERYLQQDIDSTTTRHALLQLAWKNGLPFFMLSCGSDILV 579
Query: 384 ESISARSWKTGNDLNWIYTFHS-------GGKRASATGRASKDGRWCSPPIVGQMQAS-- 434
++ + NDL YT GG A + KD + IVG+M+ S
Sbjct: 580 ATVRRKGISDNNDLESTYTLFGVEEPKKRGGAWIKAGNKNKKDQLVYN--IVGEMRVSHR 637
Query: 435 SYLCSEVGKDGVLTNSVITEFVLYDIAHARQSFSAEEKTQCTETTQSTLSSAVEKSASGD 494
C + K N + EFVL +E+ E+ S +S S
Sbjct: 638 KSRCYQAEK-----NHLHREFVL---------VGSEQLPSSEESGDSHVSREFAAFISAV 683
Query: 495 CPQRINLMDQQNSARNNSDVST----SCPWSEEDLYPHLEIAATVIQVPFNRSKSKELKS 550
Q +S ++ +ST SCP + +P+
Sbjct: 684 SQQEPETSRHSSSQHSSRSMSTPTDCSCPLG--NFHPNTR------------------DD 723
Query: 551 GLSPGTVKVITPSGLHGLPNDDETSPSPLLDRWRYGGGCDCGGWDMACPIAVLG-----N 605
+ +V + P+G HG + P PL++RW+ GG CDCGGWD C ++VL N
Sbjct: 724 SCASSSVLAVLPNGFHGTSTSGQ--PLPLIERWKSGGACDCGGWDEGCMLSVLSDDAREN 781
Query: 606 AYDNNWANSVTKEGENPMELFVLSKNEQVVIFFEQGGKEELPALSIKGNEKGQLLVHFHA 665
D + + T +G +LFV ++ +E+ A S+ +G V F +
Sbjct: 782 KGDKSTQANQTTDGSQRFDLFVQGRS-----------REDKHAFSMVSFREGLYTVEFRS 830
Query: 666 RLSAMQAFSTCISLLHCSEASTAVSIEKGKHKLYSSSLKMLLEEEVSQLIEAVTAXXXXX 725
++ +QAF+ CI +LH + G H S L + ++++++ A
Sbjct: 831 SIALLQAFAMCIVMLH---GRRPTRTQAGVHA--SQEHASLADHKLNKIMAASQG----- 880
Query: 726 XXXXXXXXXXXVVLDPPFSPMGRV 749
V PP SP+GR
Sbjct: 881 -----RAQASYVPHRPPLSPVGRA 899
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,200,108
Number of extensions: 1064653
Number of successful extensions: 2141
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2136
Number of HSP's successfully gapped: 4
Length of query: 749
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 641
Effective length of database: 11,396,689
Effective search space: 7305277649
Effective search space used: 7305277649
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)