Os03g0139200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c region domain containing protein.
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Os03g0139200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.91 | 0.265 | 9.23 | 0.646 | 0.609 | -0.822 | -0.284 | 0.253 | -0.229 | 6.86 | 23.8 | 773 | -- | -- |
| 31.98 | 0.263 | 9.22 | 0.669 | 0.609 | -0.886 | -0.238 | -- | -0.225 | 6.87 | 23.45 | 783 | -- | -- |
| 32.1 | 0.264 | 9.23 | 0.658 | 0.605 | -0.832 | -- | 0.161 | -0.225 | 6.86 | 23.66 | 787 | -- | -- |
| 32.11 | 0.264 | 9.22 | 0.678 | 0.606 | -0.872 | -- | -- | -0.217 | 6.91 | 23.52 | 793 | -- | -- |
| 48.19 | 0.323 | 9.25 | 0.585 | -- | -0.798 | -- | 0.433 | -0.259 | -- | 28 | 1336 | -- | -- |
| 42.07 | 0.304 | 9.19 | 0.917 | 0.559 | -- | -0.27 | -- | -0.0652 | 6.29 | -- | -- | -- | -- |
| 42.25 | 0.304 | 9.19 | 0.914 | 0.558 | -- | -- | -- | -0.0642 | 6.33 | -- | -- | -- | -- |
| 48.29 | 0.324 | 9.24 | 0.667 | -- | -0.876 | -- | -- | -0.224 | -- | 24.2 | 1280 | -- | -- |
| 34.4 | 0.273 | 9.26 | -- | 0.555 | -0.922 | -- | -- | -0.36 | 6.42 | 20.43 | 47520 | -- | -- |
| 58.4 | 0.357 | 9.2 | 0.928 | -- | -- | -- | -- | -0.0522 | -- | -- | -- | -- | -- |
| 64.25 | 0.375 | 9.21 | -- | 0.57 | -- | -- | -- | -0.166 | 6.24 | -- | -- | -- | -- |
| 49.96 | 0.329 | 9.26 | -- | -- | -0.936 | -- | -- | -0.355 | -- | 21.06 | 28563 | -- | -- |
| 81.14 | 0.42 | 9.22 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 8 | 29.85 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 12 | 29.89 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 24 | 29.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 77 | 30.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 128 | 30.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 294 | 31.34 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 302 | 31.36 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 15 |
| 347 | 31.48 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 374 | 31.55 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 402 | 31.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 416 | 31.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 426 | 31.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 453 | 31.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 615 | 32.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 634 | 32.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 635 | 32.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 641 | 32.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 656 | 32.09 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 9 |
| 666 | 32.10 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 692 | 32.15 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 842 | 32.36 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 890 | 32.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 903 | 32.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 995 | 32.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |