BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0139200 Os03g0139200|AK069718
         (582 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0139200  Cytochrome c region domain containing protein      1201   0.0  
Os03g0267600  Hypothetical protein                                 89   6e-18

>Os03g0139200 Cytochrome c region domain containing protein
          Length = 582

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/582 (100%), Positives = 582/582 (100%)

Query: 1   MELVYLERRNGFDEDSTSPEFSGRSAIDHQQLSIATPEVESDLGQTIYKQPLPSDEKKSR 60
           MELVYLERRNGFDEDSTSPEFSGRSAIDHQQLSIATPEVESDLGQTIYKQPLPSDEKKSR
Sbjct: 1   MELVYLERRNGFDEDSTSPEFSGRSAIDHQQLSIATPEVESDLGQTIYKQPLPSDEKKSR 60

Query: 61  SCQSCHKSPCSCRSEVFHSDLYPTLPAKMMILEFLIRSLRHPRRTHNVSDLDDMISNGAS 120
           SCQSCHKSPCSCRSEVFHSDLYPTLPAKMMILEFLIRSLRHPRRTHNVSDLDDMISNGAS
Sbjct: 61  SCQSCHKSPCSCRSEVFHSDLYPTLPAKMMILEFLIRSLRHPRRTHNVSDLDDMISNGAS 120

Query: 121 TGSVVLGPSEKMMLDSLHSLVDAKTRPKSPSFFHSGTKMRKARSKSHIITQSEILKLISP 180
           TGSVVLGPSEKMMLDSLHSLVDAKTRPKSPSFFHSGTKMRKARSKSHIITQSEILKLISP
Sbjct: 121 TGSVVLGPSEKMMLDSLHSLVDAKTRPKSPSFFHSGTKMRKARSKSHIITQSEILKLISP 180

Query: 181 ETWEISSPGVSPLKKSTAELSMHEKMVSSDTPSMSSNQPVLSSCPSSLSAGLLQCIWKDG 240
           ETWEISSPGVSPLKKSTAELSMHEKMVSSDTPSMSSNQPVLSSCPSSLSAGLLQCIWKDG
Sbjct: 181 ETWEISSPGVSPLKKSTAELSMHEKMVSSDTPSMSSNQPVLSSCPSSLSAGLLQCIWKDG 240

Query: 241 LPHFELSLDNPMAVYTANPTKAHDNDKPLDYVYLFHSGEQGRKDWLGNSSSVSRLVGKMK 300
           LPHFELSLDNPMAVYTANPTKAHDNDKPLDYVYLFHSGEQGRKDWLGNSSSVSRLVGKMK
Sbjct: 241 LPHFELSLDNPMAVYTANPTKAHDNDKPLDYVYLFHSGEQGRKDWLGNSSSVSRLVGKMK 300

Query: 301 VSSSLVLNPDKSTSMETEFVLYGSPDDYLRQMQSSYGVTKGKGLAKRVADIMKPSNLNSS 360
           VSSSLVLNPDKSTSMETEFVLYGSPDDYLRQMQSSYGVTKGKGLAKRVADIMKPSNLNSS
Sbjct: 301 VSSSLVLNPDKSTSMETEFVLYGSPDDYLRQMQSSYGVTKGKGLAKRVADIMKPSNLNSS 360

Query: 361 PKHVWKFGKSSSQQIDEMTEIPEGEQCSAKESVLKNLVADDLPTNQEIAAIVVRKQRRER 420
           PKHVWKFGKSSSQQIDEMTEIPEGEQCSAKESVLKNLVADDLPTNQEIAAIVVRKQRRER
Sbjct: 361 PKHVWKFGKSSSQQIDEMTEIPEGEQCSAKESVLKNLVADDLPTNQEIAAIVVRKQRRER 420

Query: 421 RKSPVLGGWGLKFLEKAGATHPGSTEDGDVQNKKNNAGSVSAIFPRGYHGGAASKNGSPA 480
           RKSPVLGGWGLKFLEKAGATHPGSTEDGDVQNKKNNAGSVSAIFPRGYHGGAASKNGSPA
Sbjct: 421 RKSPVLGGWGLKFLEKAGATHPGSTEDGDVQNKKNNAGSVSAIFPRGYHGGAASKNGSPA 480

Query: 481 SLIGRWRSGGRCDCGGWDIGCPIRVLQNDGCGTSPQAESQSQDRKSVELSVKGAKKGPMF 540
           SLIGRWRSGGRCDCGGWDIGCPIRVLQNDGCGTSPQAESQSQDRKSVELSVKGAKKGPMF
Sbjct: 481 SLIGRWRSGGRCDCGGWDIGCPIRVLQNDGCGTSPQAESQSQDRKSVELSVKGAKKGPMF 540

Query: 541 RLVNITDDLHIIYFDSSLSPLQCFSAGIAIIHSQAPHLYPKL 582
           RLVNITDDLHIIYFDSSLSPLQCFSAGIAIIHSQAPHLYPKL
Sbjct: 541 RLVNITDDLHIIYFDSSLSPLQCFSAGIAIIHSQAPHLYPKL 582



>Os03g0267600 Hypothetical protein
          Length = 899

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 14/145 (9%)

Query: 438 GATHPGSTEDGDVQNKKNNAGSVSAIFPRGYHGGAASKNGSPASLIGRWRSGGRCDCGGW 497
           G  HP + +D         + SV A+ P G+HG   S +G P  LI RW+SGG CDCGGW
Sbjct: 714 GNFHPNTRDDSCA------SSSVLAVLPNGFHG--TSTSGQPLPLIERWKSGGACDCGGW 765

Query: 498 DIGCPIRVLQNDG----CGTSPQAESQSQDRKSVELSVKGAKKGP--MFRLVNITDDLHI 551
           D GC + VL +D        S QA   +   +  +L V+G  +     F +V+  + L+ 
Sbjct: 766 DEGCMLSVLSDDARENKGDKSTQANQTTDGSQRFDLFVQGRSREDKHAFSMVSFREGLYT 825

Query: 552 IYFDSSLSPLQCFSAGIAIIHSQAP 576
           + F SS++ LQ F+  I ++H + P
Sbjct: 826 VEFRSSIALLQAFAMCIVMLHGRRP 850



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,250,009
Number of extensions: 958581
Number of successful extensions: 2009
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 3
Length of query: 582
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 476
Effective length of database: 11,501,117
Effective search space: 5474531692
Effective search space used: 5474531692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)