BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0828900 Os02g0828900|AK073195
(995 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0828900 Zinc finger, RING-type domain containing protein 1997 0.0
Os02g0109400 Transcription factor jumonji/aspartyl beta-hyd... 737 0.0
Os03g0430400 Similar to Nuclear protein 5qNCA 586 e-167
Os09g0393200 Transcription factor jumonji/aspartyl beta-hyd... 218 2e-56
Os09g0388800 146 7e-35
Os07g0557500 Zinc finger, RING-type domain containing protein 125 2e-28
>Os02g0828900 Zinc finger, RING-type domain containing protein
Length = 995
Score = 1997 bits (5173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 965/979 (98%), Positives = 965/979 (98%)
Query: 1 MAAEEVEAAAIDGSGEEAKRKSGKQRGSGAKGRRRNGDRAFRPPAMRPEEEGRGVATRPG 60
MAAEEVEAAAIDGSGEEAKRKSGKQRGSGAKGRRRNGDRAFRPPAMRPEEEGRGVATRPG
Sbjct: 1 MAAEEVEAAAIDGSGEEAKRKSGKQRGSGAKGRRRNGDRAFRPPAMRPEEEGRGVATRPG 60
Query: 61 ALRERKXXXXXXXXXXXXXXVEKTDQLLEPLNKPKRRDAGKKRGPRKKKVDQENIKTHRH 120
ALRERK VEKTDQLLEPLNKPKRRDAGKKRGPRKKKVDQENIKTHRH
Sbjct: 61 ALRERKPPPNAFNAPDDDEDVEKTDQLLEPLNKPKRRDAGKKRGPRKKKVDQENIKTHRH 120
Query: 121 NANAVKGKMLVNDKVSKTEKKRKRGDTGAAENNGKGKKMLTGENALMCHQCQRNDKGRVV 180
NANAVKGKMLVNDKVSKTEKKRKRGDTGAAENNGKGKKMLTGENALMCHQCQRNDKGRVV
Sbjct: 121 NANAVKGKMLVNDKVSKTEKKRKRGDTGAAENNGKGKKMLTGENALMCHQCQRNDKGRVV 180
Query: 181 WCKTCNNKRFCVPCINQWYPDLPENEFAAKCPYCRKNCNCKACLRMRGVEEPPRKEISKE 240
WCKTCNNKRFCVPCINQWYPDLPENEFAAKCPYCRKNCNCKACLRMRGVEEPPRKEISKE
Sbjct: 181 WCKTCNNKRFCVPCINQWYPDLPENEFAAKCPYCRKNCNCKACLRMRGVEEPPRKEISKE 240
Query: 241 NQIRYACHVLRLLRPWLIELRQEQMAEKELEAKIQGVSVDQIKVEQAVCDLDERVYCNRC 300
NQIRYACHVLRLLRPWLIELRQEQMAEKELEAKIQGVSVDQIKVEQAVCDLDERVYCNRC
Sbjct: 241 NQIRYACHVLRLLRPWLIELRQEQMAEKELEAKIQGVSVDQIKVEQAVCDLDERVYCNRC 300
Query: 301 STSIVDFHRSCKHCFYDLCLTCCQELRKGEIPGGEEVEILDPEERDKDYAFGKILSDGEN 360
STSIVDFHRSCKHCFYDLCLTCCQELRKGEIPGGEEVEILDPEERDKDYAFGKILSDGEN
Sbjct: 301 STSIVDFHRSCKHCFYDLCLTCCQELRKGEIPGGEEVEILDPEERDKDYAFGKILSDGEN 360
Query: 361 QRDSLKCRSDTQNSESNKGMASDENQKKALLLWKANSNGSIPCPRKEKEDCSFSSLDLKC 420
QRDSLKCRSDTQNSESNKGMASDENQKKALLLWKANSNGSIPCPRKEKEDCSFSSLDLKC
Sbjct: 361 QRDSLKCRSDTQNSESNKGMASDENQKKALLLWKANSNGSIPCPRKEKEDCSFSSLDLKC 420
Query: 421 LFPEKLLPELEDRSEKVFWSETFAKELGRTSELCPCFDHSGKIRSDSKKLRQAANREDSS 480
LFPEKLLPELEDRSEKVFWSETFAKELGRTSELCPCFDHSGKIRSDSKKLRQAANREDSS
Sbjct: 421 LFPEKLLPELEDRSEKVFWSETFAKELGRTSELCPCFDHSGKIRSDSKKLRQAANREDSS 480
Query: 481 DNYLYCPVATDIQDADLLHFQMHWAKGEPVVVSDTLKLTSGLSWEPMVMWRAVRERTKGK 540
DNYLYCPVATDIQDADLLHFQMHWAKGEPVVVSDTLKLTSGLSWEPMVMWRAVRERTKGK
Sbjct: 481 DNYLYCPVATDIQDADLLHFQMHWAKGEPVVVSDTLKLTSGLSWEPMVMWRAVRERTKGK 540
Query: 541 AEDEQFAVRAVDCLDWCEVEINIHMFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRL 600
AEDEQFAVRAVDCLDWCEVEINIHMFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRL
Sbjct: 541 AEDEQFAVRAVDCLDWCEVEINIHMFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRL 600
Query: 601 PRHGAEFISALPFPEYTDPRYGPLNLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVT 660
PRHGAEFISALPFPEYTDPRYGPLNLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVT
Sbjct: 601 PRHGAEFISALPFPEYTDPRYGPLNLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVT 660
Query: 661 KLHCDMSDAVNILTHTAEVPCETYDAVQIKNTQKKMKMQDDMEIYGMIESGSELKPSACP 720
KLHCDMSDAVNILTHTAEVPCETYDAVQIKNTQKKMKMQDDMEIYGMIESGSELKPSACP
Sbjct: 661 KLHCDMSDAVNILTHTAEVPCETYDAVQIKNTQKKMKMQDDMEIYGMIESGSELKPSACP 720
Query: 721 VELGNKAVGEAPKASCSKENVHTLKDKSNGLDINASPPDDAGGDARDEALSYESVVHSDV 780
VELGNKAVGEAPKASCSKENVHTLKDKSNGLDINASPPDDAGGDARDEALSYESVVHSDV
Sbjct: 721 VELGNKAVGEAPKASCSKENVHTLKDKSNGLDINASPPDDAGGDARDEALSYESVVHSDV 780
Query: 781 AQCPNHNHETNNSDDARIGAQRCQKKAKGRPPKTGSGVSEHQESGGALWDIFRREDSEKL 840
AQCPNHNHETNNSDDARIGAQRCQKKAKGRPPKTGSGVSEHQESGGALWDIFRREDSEKL
Sbjct: 781 AQCPNHNHETNNSDDARIGAQRCQKKAKGRPPKTGSGVSEHQESGGALWDIFRREDSEKL 840
Query: 841 QDFLRKHAPEFRHIHCNPVKQVIHPIHDQAFYLTAEHKRKLKEEYGVEPWTFEQKLGEAV 900
QDFLRKHAPEFRHIHCNPVKQVIHPIHDQAFYLTAEHKRKLKEEYGVEPWTFEQKLGEAV
Sbjct: 841 QDFLRKHAPEFRHIHCNPVKQVIHPIHDQAFYLTAEHKRKLKEEYGVEPWTFEQKLGEAV 900
Query: 901 LIPAGCPHQVRNLKSCIKVALDFVSPENVGECVRLTKEFRRLPSSHRAKEDKLEIKKMAF 960
LIPAGCPHQVRNLKSCIKVALDFVSPENVGECVRLTKEFRRLPSSHRAKEDKLEIKKMAF
Sbjct: 901 LIPAGCPHQVRNLKSCIKVALDFVSPENVGECVRLTKEFRRLPSSHRAKEDKLEIKKMAF 960
Query: 961 HALNEVLNFLDPPSSEGSK 979
HALNEVLNFLDPPSSEGSK
Sbjct: 961 HALNEVLNFLDPPSSEGSK 979
>Os02g0109400 Transcription factor jumonji/aspartyl beta-hydroxylase domain
containing protein
Length = 997
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/888 (46%), Positives = 530/888 (59%), Gaps = 96/888 (10%)
Query: 165 ALMCHQCQRNDKGRVVWCKTCNNK----RFCVPCINQWYPDLPENEFAAKCPYCRKNCNC 220
+ MCHQCQR D GRVV C+ K R+CV CI +WYP L E++F CP C NCNC
Sbjct: 97 STMCHQCQRKDSGRVVRCRNGAEKNRRHRYCVKCIKRWYPHLTEDDFENCCPVCHNNCNC 156
Query: 221 KACLRMRGVEEPPRKEISKENQIRYACHVLRLLRPWLIELRQEQMAEKELEAKIQGVSVD 280
K CLR + + ++ +N+I+Y+ + R L PWL +L QEQM EK +EA I+G+ V
Sbjct: 157 KTCLRTNVINKGDKEFADGKNKIKYSLRIARFLLPWLKQLHQEQMLEKSVEATIKGIDVT 216
Query: 281 QIKVEQAVCDLDERVYCNRCSTSIVDFHRSCKHCFYDLCLTCCQELRKGEIPGGEEVEIL 340
++V QA + DER+YC+ C TSIVDFHRSCK YDLCL+CCQELR+G G V
Sbjct: 217 DLEVPQAQFNNDERIYCDNCRTSIVDFHRSCKSGHYDLCLSCCQELRQGLTTG--TVVTC 274
Query: 341 DPEERDKDYAFGKILSDGENQRDSLKCRSDTQNSESNKGMASDENQKKALLLWKANSNGS 400
D + + L +G + ++ + Q ++ G A+ L+W+A SNGS
Sbjct: 275 DTAVDVPEIEGKEGLQEGSSHSSAVGQGASDQQNDRLIGSAAPSEDCTPSLIWRAKSNGS 334
Query: 401 IPCPRKEKEDCSFSSLDLKCLFPEKLLPELEDRSEKVFWSETFAKELGRTSELCPCFDHS 460
IPCP C L+L+CLF E + +L D+ V ET +ELG + C CF S
Sbjct: 335 IPCP-PNAGGCGDCLLELRCLFKENFISDLLDKVNSVVNKET-EQELGGSR--CSCFTES 390
Query: 461 GKIRSDSKKLRQAANREDSSDNYLYCPVATDIQDADLLHFQMHWAKGEPVVVSDTLKLTS 520
G++ +++ R++A REDS+DNY+YCP A ++Q L HFQ HW G+PV+V D L+LTS
Sbjct: 391 GEVNNETS--RKSACREDSNDNYIYCPTAREVQSGALDHFQQHWLNGQPVIVRDVLELTS 448
Query: 521 GLSWEPMVMWRAVRERTKGKAEDEQFAVRAVDCLDWCE---------------------- 558
GLSWEPMVMWRA+RE+ + K E E+ +V A+DCL W E
Sbjct: 449 GLSWEPMVMWRALREK-RDKKEHERLSVIALDCLTWFEFMYHQDVLVVPVSYLGFNSTIE 507
Query: 559 -------VEINIHMFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRLPRHGAEFISAL 611
V+INIHMFF GY+RG P +LKLKDWP SSF++RLPRHGAEF+SAL
Sbjct: 508 TTLYFKLVDINIHMFFEGYSRGAVGSEDL-PVLLKLKDWPQHSSFEERLPRHGAEFMSAL 566
Query: 612 PFPEYTDPRYGPLNLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDMSDAVN 671
PF EYTDP+ GPLNLAVKLP V KPDLGPKTYIAYG ++ELG GDSVTK+HCDMSDAVN
Sbjct: 567 PFREYTDPKSGPLNLAVKLPKHVKKPDLGPKTYIAYGVAQELGIGDSVTKIHCDMSDAVN 626
Query: 672 ILTHTAEVPCETYDAVQIKNTQKKMKM-----------QDDMEIYGMIESGSELKPSACP 720
IL HT EV + I+ ++ ++ DD + ES +E+ P +
Sbjct: 627 ILMHTDEVELKAERITAIEKKKESLRKDGKNLHVLRPDHDDDTSIALSES-TEV-PRSRG 684
Query: 721 VELGNKAVGEAPKASCSKE-NVHT--LKDKSNG-LDI-NASPPDDAGGDARDEALSYESV 775
+E G+ AP + + VHT + D++ G L + N P+ + D S
Sbjct: 685 LENGSSIKQPAPNVAVMDQGGVHTDMVADEAEGNLSLSNGQSPNQSDAHNMDITFSKGET 744
Query: 776 VHSDVA---------------QC-PNHNHETNNSDDARIGAQR---CQKKAKG------- 809
HS +C +H ++ S D + ++R C A G
Sbjct: 745 DHSICTINGGEEMGNGFGREDKCKSSHGVGSSESSDCQRRSRRRDACSSSATGEINETSM 804
Query: 810 ---------RPPKTGSGVSEHQESGGALWDIFRREDSEKLQDFLRKHAPEFRHIHCNPVK 860
P V +Q GGALWDIFRRED KL D+L KHA EFRH + VK
Sbjct: 805 ETNKFTISIEPKDDHPFVEGNQTEGGALWDIFRREDVSKLHDYLMKHAEEFRHYNYETVK 864
Query: 861 QVIHPIHDQAFYLTAEHKRKLKEEYGVEPWTFEQKLGEAVLIPAGCPHQVRNLKSCIKVA 920
QV HPIHDQ FYLT EHKRKLKEE+G+EPWTFEQKLGEAV IPAGCPHQVRNLKSCIKVA
Sbjct: 865 QVSHPIHDQCFYLTNEHKRKLKEEHGIEPWTFEQKLGEAVFIPAGCPHQVRNLKSCIKVA 924
Query: 921 LDFVSPENVGECVRLTKEFRRLPSSHRAKEDKLEIKKMAFHALNEVLN 968
LDFVSPENV EC+RLT+EFR LP HR EDKLE+KK+A +AL++ ++
Sbjct: 925 LDFVSPENVQECIRLTEEFRLLPKGHRVNEDKLEVKKIALYALDQAID 972
>Os03g0430400 Similar to Nuclear protein 5qNCA
Length = 454
Score = 586 bits (1511), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/413 (69%), Positives = 322/413 (77%), Gaps = 17/413 (4%)
Query: 565 MFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRLPRHGAEFISALPFPEYTDPRYGPL 624
MFFMGY RGR HP T+WPEMLKLKDWPPSS FDQRLPRHGAEFI+ALPFPEYTDPRYGPL
Sbjct: 1 MFFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPL 60
Query: 625 NLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDMSDAVNILTHTAEVPCETY 684
NLAV+LP GVLKPDLGPKTYIAYG EELGRGDSVTKLHCDMSDAVNIL HTAEV +T
Sbjct: 61 NLAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTE 120
Query: 685 DAVQIKNTQKKMKMQDDMEIYGMIESGSELKPSACPVELGNKAVGEAPKASCSKENVHTL 744
+I + KM+ QD E++G+ ESG++ KA EA K SC+ EN HT
Sbjct: 121 QLDKIAKIKMKMREQDLHELFGVSESGAK-----------GKADDEASKISCNMENKHTS 169
Query: 745 KDKSNGLDINASPPDDAGGDARDEALSYESVVHSDVAQCPNHNHETNNSDDARIGAQRCQ 804
+ GLDINA PPDD+G D D+ +S V S++ QC HNHE N+S GA C
Sbjct: 170 NQSTKGLDINALPPDDSGSDIGDKPSFCQSEVESELTQCSKHNHEVNSSVKMHAGAH-CT 228
Query: 805 KKAKGRPPKTG-----SGVSEHQESGGALWDIFRREDSEKLQDFLRKHAPEFRHIHCNPV 859
+G ++G S S+ Q++GGALWDIFRREDSEKLQD+LRKHA EFRHIHCNPV
Sbjct: 229 SDNQGYIDRSGFKRKDSDCSDQQKTGGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPV 288
Query: 860 KQVIHPIHDQAFYLTAEHKRKLKEEYGVEPWTFEQKLGEAVLIPAGCPHQVRNLKSCIKV 919
K V HPIHDQ FYLT EHKRKLKEE+GVEPWTFEQKLG+AV IPAGCPHQVRNLKSCIKV
Sbjct: 289 KNVSHPIHDQTFYLTVEHKRKLKEEHGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKV 348
Query: 920 ALDFVSPENVGECVRLTKEFRRLPSSHRAKEDKLEIKKMAFHALNEVLNFLDP 972
ALDFVSPENVGECV+LT EFRRLPS HRAKEDKLEIKK+A +AL EV+NFLDP
Sbjct: 349 ALDFVSPENVGECVKLTGEFRRLPSDHRAKEDKLEIKKIALNALKEVVNFLDP 401
>Os09g0393200 Transcription factor jumonji/aspartyl beta-hydroxylase domain
containing protein
Length = 379
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 118/138 (85%)
Query: 818 VSEHQESGGALWDIFRREDSEKLQDFLRKHAPEFRHIHCNPVKQVIHPIHDQAFYLTAEH 877
++ GGALWDIFRRED KL+ +L KH+ EFRHI+C+ V++V +P+HD+ FYLT EH
Sbjct: 206 INSETNKGGALWDIFRREDVPKLKLYLDKHSKEFRHIYCSAVQKVCNPVHDETFYLTEEH 265
Query: 878 KRKLKEEYGVEPWTFEQKLGEAVLIPAGCPHQVRNLKSCIKVALDFVSPENVGECVRLTK 937
KRKLKEE+G+EPWTF QKLGEAV IPAGCPHQVRNLKSC K+ALDFVSPENV EC+ LT+
Sbjct: 266 KRKLKEEHGIEPWTFVQKLGEAVFIPAGCPHQVRNLKSCTKIALDFVSPENVKECLSLTE 325
Query: 938 EFRRLPSSHRAKEDKLEI 955
+FRRLP +HRAKEDKLE+
Sbjct: 326 DFRRLPKNHRAKEDKLEL 343
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 14/217 (6%)
Query: 520 SGLSWEPMVMWRAVRERTKGKAEDEQFAVRAVDCLDWCEVEINIHMFFMGYTRGRTHPRT 579
S LSWEP MW V E V+A+DCL CEVEI FF GY GR + +
Sbjct: 2 SCLSWEPPDMWSKVH---GTGTSPEMKNVKAIDCLSCCEVEICTQDFFNGYYEGRMY-QN 57
Query: 580 YWPEMLKLKDWPPSSSFDQRLPRHGAEFISALPFPEYTDPRYGPLNLAVKLPGGVLKPDL 639
WPEMLKLKDWP S+ F++ LP HG +++++LPF YT+ + G LN++ LP +LK D+
Sbjct: 58 LWPEMLKLKDWPTSNHFEELLPSHGVKYMNSLPFQPYTNLKSGLLNVSTLLPDDILKLDM 117
Query: 640 GPKTYIAYGFSEELGRGDSVTKLHCDMSDAVNILTHTAEVPCETYDAVQIKNTQKKMKMQ 699
GPK+YIAYG+++ELGRGDSVTKLHCD+SDAVN+L HTAEV IK+ +++ Q
Sbjct: 118 GPKSYIAYGYAQELGRGDSVTKLHCDLSDAVNVLMHTAEVDPSEEQIDAIKSLKRRHTAQ 177
Query: 700 DDMEIYGMIESGSELKPSACPVELGNKAVGEAPKASC 736
++ E G + G+ P C G+A + SC
Sbjct: 178 NEKECSGNAD-GNYTSPKIC---------GDANELSC 204
>Os09g0388800
Length = 245
Score = 146 bits (369), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 89/122 (72%), Gaps = 7/122 (5%)
Query: 548 VRAVDCLDWCEVEINIHMFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRLPRHGAEF 607
V+ +DCL CE FF GY GR + + WPEMLKL DWP S+ F++ LP HG ++
Sbjct: 17 VKVIDCLSCCE------HFFNGYYEGRMY-QNLWPEMLKLNDWPISNHFEELLPSHGVKY 69
Query: 608 ISALPFPEYTDPRYGPLNLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDMS 667
I++LPF YT+ + G LN++ LP +LK D+GPK+YIAYG+++ELGRGDSVTKLHCD+S
Sbjct: 70 INSLPFQAYTNLKSGLLNVSTLLPDDILKLDMGPKSYIAYGYAQELGRGDSVTKLHCDLS 129
Query: 668 DA 669
DA
Sbjct: 130 DA 131
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 50/61 (81%)
Query: 826 GALWDIFRREDSEKLQDFLRKHAPEFRHIHCNPVKQVIHPIHDQAFYLTAEHKRKLKEEY 885
GALWDIFRRED KL+ +L KH+ +FRHI+C+ V++V +P+HD+ F LT E KRKLKEE+
Sbjct: 148 GALWDIFRREDVPKLKLYLDKHSKKFRHIYCSAVQKVCNPVHDETFCLTKEQKRKLKEEH 207
Query: 886 G 886
G
Sbjct: 208 G 208
>Os07g0557500 Zinc finger, RING-type domain containing protein
Length = 693
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 22/176 (12%)
Query: 167 MCHQCQRNDKGRVVWCKTCNNKRFCVPCINQWYPDLPENEFAAKCPYCRKNCNCKACLRM 226
CH+C R+V CK C+N+ FC CIN+WY L + + +CP CR +C CK C
Sbjct: 436 TCHRCGMKKAARIVQCKNCDNRYFCNSCINKWYSGLSKKDIKTRCPVCRGSCGCKQCTLG 495
Query: 227 RGVEEPPRKEISKEN--------QIRYACHVLRLLRPWLIELRQEQMAEKELEAKIQGVS 278
+ + ISKE+ I+ H L L P +EL QEQ+ E E+EAKIQ
Sbjct: 496 QT-----KGAISKESSGDQDKLISIKICNHQLYKLLP--VELNQEQLDELEIEAKIQETK 548
Query: 279 VDQIKVEQAVCDLDER---VYCNRCSTSIVDFHRSCKHCFYDLCLTCCQELRKGEI 331
+ ++V+ A DE+ + CN C S+ F RSC C + LCL+CCQ++R G I
Sbjct: 549 ISDVRVQVA----DEQSGSLDCNNCKLSVHRFLRSCPRCPFKLCLSCCQKIRDGNI 600
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,183,635
Number of extensions: 1737582
Number of successful extensions: 6134
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 6122
Number of HSP's successfully gapped: 9
Length of query: 995
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 884
Effective length of database: 11,240,047
Effective search space: 9936201548
Effective search space used: 9936201548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)