FiT-DB / Search/ Help/ Sample detail

Os03g0430400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nuclear protein 5qNCA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0135) R2 : 0.0615
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.156 (0.0285) R2dN8 : 0.0794 R2N8 : 0.0615
σ : 0.255
deviance : 29.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.79 0.198 12.5 -0.547 0.258 0.0212 -0.496 1.62 0.0851 12.1 29.79 278 -- --
18.18 0.199 12.5 -0.396 0.263 0.199 -0.482 -- 0.104 12.1 29.9 298 -- --
18.78 0.202 12.5 -0.597 0.264 -0.00324 -- 1.82 0.0805 12 29.7 223 -- --
19.35 0.205 12.5 -0.408 0.269 0.209 -- -- 0.0983 12.1 30 253 -- --
22.95 0.223 12.5 -0.615 -- -0.0454 -- 2.08 0.0762 -- 29.7 288 -- --
19.26 0.206 12.5 -0.42 0.255 -- -0.518 -- 0.111 11.6 -- -- -- --
20.37 0.211 12.5 -0.442 0.259 -- -- -- 0.108 11.1 -- -- -- --
22.26 0.22 12.5 -0.382 -- 0.256 -- -- 0.138 -- 27.59 960 -- --
23.73 0.227 12.5 -- 0.274 0.277 -- -- 0.138 12.5 30 298 -- --
24.58 0.232 12.5 -0.448 -- -- -- -- 0.106 -- -- -- -- --
25.53 0.236 12.5 -- 0.264 -- -- -- 0.158 11.3 -- -- -- --
25.15 0.234 12.4 -- -- 0.34 -- -- 0.235 -- 26.1 882 -- --
29.88 0.255 12.5 -- -- -- -- -- 0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.39 atmosphere 1005.0 270 < th dose independent rect. 12 6
5 17.48 temperature 30.0 270 < th dose independent rect. 18 21
9 17.52 temperature 30.0 270 < th dose independent rect. 7 8
16 17.59 temperature 30.0 270 < th dose independent rect. 20 17
19 17.60 atmosphere 1015.0 90 < th dose dependent rect. 13 8
23 17.62 temperature 30.0 270 < th dose independent rect. 22 23
24 17.63 temperature 30.0 270 < th dose independent rect. 9 15
25 17.63 humidity 60.0 270 > th dose independent rect. 20 17
27 17.64 temperature 30.0 270 < th dose independent rect. 13 22
31 17.65 temperature 30.0 270 < th dose independent rect. 11 23
32 17.65 temperature 30.0 270 < th dose independent rect. 24 23
36 17.66 atmosphere 1015.0 270 < th dose dependent rect. 11 8
39 17.68 humidity 60.0 270 > th dose independent rect. 7 7
40 17.69 temperature 30.0 270 > th dose independent rect. 10 6
47 17.70 humidity 60.0 270 > th dose independent rect. 18 20
54 17.72 atmosphere 1005.0 90 > th dose independent rect. 9 7
55 17.72 humidity 90.0 270 < th dose independent rect. 11 9
59 17.72 temperature 30.0 270 > th dose independent rect. 18 22
66 17.73 atmosphere 1015.0 30 < th dose dependent rect. 6 15
67 17.74 temperature 30.0 270 < th dose independent sin 2 NA
75 17.75 temperature 30.0 270 > th dose independent sin 1 NA
77 17.75 atmosphere 1005.0 270 < th dose independent rect. 13 2
103 17.75 temperature 25.0 90 > th dose independent rect. 13 20
110 17.75 atmosphere 1010.0 270 < th dose dependent rect. 24 18
120 17.76 atmosphere 1000.0 270 > th dose independent rect. 9 15
125 17.77 atmosphere 1005.0 10 < th dose independent rect. 13 7
127 17.77 atmosphere 1005.0 270 < th dose independent rect. 3 15
129 17.77 atmosphere 1000.0 30 > th dose independent rect. 21 18
170 17.80 humidity 90.0 90 < th dose independent rect. 13 8
178 17.80 temperature 30.0 270 > th dose independent rect. 15 23
190 17.81 atmosphere 1015.0 30 < th dose dependent rect. 15 6
197 17.82 atmosphere 1005.0 270 < th dose independent sin 22 NA
207 17.82 precipitation 0.1 270 < th dose independent rect. 22 23
215 17.82 precipitation 0.1 270 < th dose dependent rect. 22 23
216 17.83 temperature 30.0 270 < th dose independent no NA NA
247 17.83 temperature 10.0 30 > th dose dependent rect. 13 8
266 17.84 humidity 90.0 270 < th dose dependent rect. 11 9
269 17.84 temperature 25.0 10 > th dose dependent rect. 13 20
283 17.85 temperature 25.0 90 > th dose independent rect. 15 18
293 17.85 temperature 10.0 270 > th dose dependent rect. 11 9
298 17.86 temperature 30.0 270 > th dose independent no NA NA
299 17.86 humidity 60.0 270 < th dose independent rect. 13 1
300 17.86 humidity 70.0 4320 < th dose independent rect. 15 1
332 17.86 temperature 30.0 270 < th dose independent rect. 3 15
429 17.86 temperature 10.0 30 > th dose dependent rect. 15 6
441 17.87 radiation 40.0 90 < th dose independent rect. 13 8
453 17.88 humidity 90.0 10 < th dose independent rect. 15 6
455 17.88 precipitation 0.1 270 < th dose independent rect. 11 9
463 17.88 radiation 10.0 10 < th dose independent rect. 6 15
464 17.88 wind 7.0 90 < th dose independent rect. 21 16
471 17.88 radiation 1.0 270 > th dose independent rect. 11 20
477 17.88 precipitation 0.1 270 < th dose dependent rect. 11 9
483 17.88 humidity 60.0 720 > th dose dependent rect. 23 20
487 17.89 humidity 70.0 4320 > th dose independent rect. 15 1
488 17.89 temperature 30.0 270 > th dose independent rect. 11 2
491 17.89 precipitation 0.1 30 < th dose independent rect. 15 6
496 17.89 precipitation 0.1 90 < th dose independent rect. 13 8
504 17.89 precipitation 0.1 30 < th dose dependent rect. 15 6
508 17.89 precipitation 0.1 90 < th dose dependent rect. 13 8
511 17.89 humidity 60.0 720 > th dose dependent rect. 23 18
516 17.90 humidity 60.0 270 < th dose independent rect. 12 3
518 17.90 humidity 70.0 270 < th dose independent rect. 12 5
540 17.90 radiation 20.0 90 < th dose independent rect. 16 18
546 17.90 humidity 90.0 270 < th dose dependent rect. 11 7
559 17.91 humidity 60.0 14400 < th dose independent rect. 12 1
571 17.91 humidity 70.0 720 > th dose independent rect. 23 18
574 17.91 humidity 90.0 90 < th dose independent rect. 1 20
595 17.92 wind 1.0 30 > th dose independent rect. 13 8
604 17.92 wind 1.0 270 > th dose independent rect. 9 15
621 17.92 atmosphere 995.0 270 > th dose dependent rect. 5 9
625 17.92 humidity 60.0 720 > th dose dependent rect. 7 21
631 17.93 radiation 40.0 30 < th dose independent rect. 15 6
637 17.93 wind 1.0 270 > th dose independent rect. 11 9
641 17.93 atmosphere 1000.0 270 > th dose independent rect. 20 15
647 17.93 wind 9.0 30 < th dose independent rect. 21 18
650 17.93 atmosphere 1015.0 30 < th dose independent rect. 21 18
658 17.93 radiation 40.0 720 < th dose independent rect. 7 21
675 17.94 wind 9.0 30 < th dose independent rect. 15 6
677 17.94 wind 1.0 270 > th dose independent rect. 13 7
697 17.94 atmosphere 995.0 90 > th dose dependent rect. 9 7
703 17.94 temperature 25.0 10 > th dose dependent rect. 15 18
704 17.94 atmosphere 995.0 30 > th dose dependent rect. 21 18
708 17.94 humidity 90.0 270 < th dose dependent rect. 11 20
709 17.94 temperature 30.0 270 > th dose dependent rect. 17 21
711 17.95 humidity 60.0 14400 > th dose independent rect. 12 1
712 17.95 humidity 70.0 720 < th dose independent rect. 15 1
717 17.95 wind 1.0 30 > th dose independent rect. 15 6
718 17.95 temperature 10.0 1440 > th dose independent rect. 16 6
724 17.95 wind 1.0 270 > th dose independent rect. 7 7
745 17.95 temperature 10.0 1440 > th dose independent rect. 22 18
748 17.95 humidity 50.0 14400 > th dose independent rect. 15 18
755 17.95 atmosphere 1000.0 270 > th dose independent rect. 18 21
760 17.95 radiation 40.0 720 < th dose independent rect. 7 23
769 17.95 humidity 90.0 270 < th dose dependent rect. 11 17
771 17.95 humidity 60.0 720 > th dose dependent rect. 9 19
780 17.96 humidity 50.0 14400 > th dose independent rect. 15 2
781 17.96 humidity 50.0 14400 > th dose independent rect. 15 4
783 17.96 atmosphere 1005.0 10 < th dose independent rect. 13 5
784 17.96 temperature 10.0 30 > th dose independent rect. 15 6
790 17.96 atmosphere 1010.0 30 < th dose independent rect. 15 6
815 17.96 temperature 10.0 30 > th dose independent rect. 21 18
820 17.96 radiation 40.0 720 < th dose independent rect. 21 22
822 17.96 temperature 30.0 90 > th dose dependent rect. 11 6
835 17.96 humidity 90.0 30 < th dose dependent rect. 13 20
848 17.97 radiation 1.0 270 > th dose independent sin 15 NA
873 17.97 atmosphere 1015.0 90 < th dose independent rect. 21 16
883 17.97 humidity 70.0 720 > th dose independent rect. 7 21
885 17.97 radiation 40.0 720 < th dose independent rect. 5 23
886 17.97 temperature 30.0 270 > th dose dependent rect. 11 3
887 17.97 humidity 80.0 270 < th dose dependent rect. 12 4
953 17.98 radiation 1.0 270 > th dose independent rect. 13 17
962 17.98 humidity 70.0 720 < th dose independent rect. 19 21
965 17.98 temperature 30.0 30 < th dose independent rect. 11 23
968 17.98 temperature 30.0 270 > th dose dependent sin 4 NA
975 17.98 humidity 90.0 30 < th dose dependent rect. 13 8
1000 17.98 humidity 60.0 720 > th dose dependent rect. 1 23