BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0430400 Os03g0430400|AK059145
(454 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0430400 Similar to Nuclear protein 5qNCA 948 0.0
Os02g0828900 Zinc finger, RING-type domain containing protein 585 e-167
Os02g0109400 Transcription factor jumonji/aspartyl beta-hyd... 399 e-111
Os09g0393200 Transcription factor jumonji/aspartyl beta-hyd... 223 2e-58
Os09g0388800 134 1e-31
>Os03g0430400 Similar to Nuclear protein 5qNCA
Length = 454
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 MFFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPL 60
MFFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPL
Sbjct: 1 MFFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPL 60
Query: 61 NLAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTE 120
NLAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTE
Sbjct: 61 NLAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTE 120
Query: 121 QLDKIAKIKMKMREQDLHELFGVSESGAKGKADDEASKISCNMENKHTSNQSTKGLDINA 180
QLDKIAKIKMKMREQDLHELFGVSESGAKGKADDEASKISCNMENKHTSNQSTKGLDINA
Sbjct: 121 QLDKIAKIKMKMREQDLHELFGVSESGAKGKADDEASKISCNMENKHTSNQSTKGLDINA 180
Query: 181 LPPDDSGSDIGDKPSFCQSEVESELTQCSKHNHEVNSSVKMHAGAHCTSDNQGYIDRSGF 240
LPPDDSGSDIGDKPSFCQSEVESELTQCSKHNHEVNSSVKMHAGAHCTSDNQGYIDRSGF
Sbjct: 181 LPPDDSGSDIGDKPSFCQSEVESELTQCSKHNHEVNSSVKMHAGAHCTSDNQGYIDRSGF 240
Query: 241 KRKDSDCSDQQKTGGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPVKNVSHPIHDQTF 300
KRKDSDCSDQQKTGGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPVKNVSHPIHDQTF
Sbjct: 241 KRKDSDCSDQQKTGGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPVKNVSHPIHDQTF 300
Query: 301 YLTVEHKRKLKEEHGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGE 360
YLTVEHKRKLKEEHGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGE
Sbjct: 301 YLTVEHKRKLKEEHGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGE 360
Query: 361 CVKLTGEFRRLPSDHRAKEDKLEIKKIALNALKEVVNFLDPLPKGSKNRDEVVEVTKPKR 420
CVKLTGEFRRLPSDHRAKEDKLEIKKIALNALKEVVNFLDPLPKGSKNRDEVVEVTKPKR
Sbjct: 361 CVKLTGEFRRLPSDHRAKEDKLEIKKIALNALKEVVNFLDPLPKGSKNRDEVVEVTKPKR 420
Query: 421 KYGNRRGDLKSGEDQPIDESIEERKPKKRGRSKR 454
KYGNRRGDLKSGEDQPIDESIEERKPKKRGRSKR
Sbjct: 421 KYGNRRGDLKSGEDQPIDESIEERKPKKRGRSKR 454
>Os02g0828900 Zinc finger, RING-type domain containing protein
Length = 995
Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/413 (69%), Positives = 322/413 (77%), Gaps = 17/413 (4%)
Query: 1 MFFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPL 60
MFFMGY RGR HP T+WPEMLKLKDWPPSS FDQRLPRHGAEFI+ALPFPEYTDPRYGPL
Sbjct: 565 MFFMGYTRGRTHPRTYWPEMLKLKDWPPSSSFDQRLPRHGAEFISALPFPEYTDPRYGPL 624
Query: 61 NLAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTE 120
NLAV+LP GVLKPDLGPKTYIAYG EELGRGDSVTKLHCDMSDAVNIL HTAEV +T
Sbjct: 625 NLAVKLPGGVLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDMSDAVNILTHTAEVPCETY 684
Query: 121 QLDKIAKIKMKMREQDLHELFGVSESGAK-----------GKADDEASKISCNMENKHTS 169
+I + KM+ QD E++G+ ESG++ KA EA K SC+ EN HT
Sbjct: 685 DAVQIKNTQKKMKMQDDMEIYGMIESGSELKPSACPVELGNKAVGEAPKASCSKENVHTL 744
Query: 170 NQSTKGLDINALPPDDSGSDIGDKPSFCQSEVESELTQCSKHNHEVNSSVKMHAGAH-CT 228
+ GLDINA PPDD+G D D+ +S V S++ QC HNHE N+S GA C
Sbjct: 745 KDKSNGLDINASPPDDAGGDARDEALSYESVVHSDVAQCPNHNHETNNSDDARIGAQRCQ 804
Query: 229 SDNQGYIDRSGFKRKDSDCSDQQKTGGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPV 288
+G ++G S S+ Q++GGALWDIFRREDSEKLQD+LRKHA EFRHIHCNPV
Sbjct: 805 KKAKGRPPKTG-----SGVSEHQESGGALWDIFRREDSEKLQDFLRKHAPEFRHIHCNPV 859
Query: 289 KNVSHPIHDQTFYLTVEHKRKLKEEHGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKV 348
K V HPIHDQ FYLT EHKRKLKEE+GVEPWTFEQKLG+AV IPAGCPHQVRNLKSCIKV
Sbjct: 860 KQVIHPIHDQAFYLTAEHKRKLKEEYGVEPWTFEQKLGEAVLIPAGCPHQVRNLKSCIKV 919
Query: 349 ALDFVSPENVGECVKLTGEFRRLPSDHRAKEDKLEIKKIALNALKEVVNFLDP 401
ALDFVSPENVGECV+LT EFRRLPS HRAKEDKLEIKK+A +AL EV+NFLDP
Sbjct: 920 ALDFVSPENVGECVRLTKEFRRLPSSHRAKEDKLEIKKMAFHALNEVLNFLDP 972
>Os02g0109400 Transcription factor jumonji/aspartyl beta-hydroxylase domain
containing protein
Length = 997
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 233/478 (48%), Positives = 282/478 (58%), Gaps = 79/478 (16%)
Query: 1 MFFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPL 60
MFF GY RG P +LKLKDWP S F++RLPRHGAEF++ALPF EYTDP+ GPL
Sbjct: 521 MFFEGYSRGAVGSEDL-PVLLKLKDWPQHSSFEERLPRHGAEFMSALPFREYTDPKSGPL 579
Query: 61 NLAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTE 120
NLAV+LP V KPDLGPKTYIAYG +ELG GDSVTK+HCDMSDAVNILMHT EV E
Sbjct: 580 NLAVKLPKHVKKPDLGPKTYIAYGVAQELGIGDSVTKIHCDMSDAVNILMHTDEVELKAE 639
Query: 121 QLDKIAKIKMKMRE--QDLHEL---------FGVSES-----------GAKGK------- 151
++ I K K +R+ ++LH L +SES G+ K
Sbjct: 640 RITAIEKKKESLRKDGKNLHVLRPDHDDDTSIALSESTEVPRSRGLENGSSIKQPAPNVA 699
Query: 152 ------------ADDEASKISCNMENKHTSNQS---------TKGLDINALPPDDSGSDI 190
AD+ +S + N + NQS +KG +++ + G ++
Sbjct: 700 VMDQGGVHTDMVADEAEGNLS--LSNGQSPNQSDAHNMDITFSKGETDHSICTINGGEEM 757
Query: 191 G------DKPSFCQSEVESELTQCSKHNHEVNSSVKMHAGAHCTSDNQGYIDRSGFKRKD 244
G DK SE + C + + ++ C+S G I+ + +
Sbjct: 758 GNGFGREDKCKSSHGVGSSESSDCQRRSRRRDA---------CSSSATGEINETSMETNK 808
Query: 245 SDCS-----------DQQKTGGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPVKNVSH 293
S Q GGALWDIFRRED KL DYL KHA EFRH + VK VSH
Sbjct: 809 FTISIEPKDDHPFVEGNQTEGGALWDIFRREDVSKLHDYLMKHAEEFRHYNYETVKQVSH 868
Query: 294 PIHDQTFYLTVEHKRKLKEEHGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKVALDFV 353
PIHDQ FYLT EHKRKLKEEHG+EPWTFEQKLG+AVFIPAGCPHQVRNLKSCIKVALDFV
Sbjct: 869 PIHDQCFYLTNEHKRKLKEEHGIEPWTFEQKLGEAVFIPAGCPHQVRNLKSCIKVALDFV 928
Query: 354 SPENVGECVKLTGEFRRLPSDHRAKEDKLEIKKIALNALKEVVNFLDPLPKGSKNRDE 411
SPENV EC++LT EFR LP HR EDKLE+KKIAL AL + ++ + + +DE
Sbjct: 929 SPENVQECIRLTEEFRLLPKGHRVNEDKLEVKKIALYALDQAIDDITGKSCNERTKDE 986
>Os09g0393200 Transcription factor jumonji/aspartyl beta-hydroxylase domain
containing protein
Length = 379
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 116/131 (88%)
Query: 254 GGALWDIFRREDSEKLQDYLRKHASEFRHIHCNPVKNVSHPIHDQTFYLTVEHKRKLKEE 313
GGALWDIFRRED KL+ YL KH+ EFRHI+C+ V+ V +P+HD+TFYLT EHKRKLKEE
Sbjct: 213 GGALWDIFRREDVPKLKLYLDKHSKEFRHIYCSAVQKVCNPVHDETFYLTEEHKRKLKEE 272
Query: 314 HGVEPWTFEQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECVKLTGEFRRLPS 373
HG+EPWTF QKLG+AVFIPAGCPHQVRNLKSC K+ALDFVSPENV EC+ LT +FRRLP
Sbjct: 273 HGIEPWTFVQKLGEAVFIPAGCPHQVRNLKSCTKIALDFVSPENVKECLSLTEDFRRLPK 332
Query: 374 DHRAKEDKLEI 384
+HRAKEDKLE+
Sbjct: 333 NHRAKEDKLEL 343
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 110/161 (68%), Gaps = 2/161 (1%)
Query: 2 FFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPLN 61
FF GY GR + WPEMLKLKDWP S+ F++ LP HG +++ +LPF YT+ + G LN
Sbjct: 45 FFNGYYEGRMY-QNLWPEMLKLKDWPTSNHFEELLPSHGVKYMNSLPFQPYTNLKSGLLN 103
Query: 62 LAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTAEVSYDTEQ 121
++ LP +LK D+GPK+YIAYG +ELGRGDSVTKLHCD+SDAVN+LMHTAEV EQ
Sbjct: 104 VSTLLPDDILKLDMGPKSYIAYGYAQELGRGDSVTKLHCDLSDAVNVLMHTAEVDPSEEQ 163
Query: 122 LDKIAKIKMKMREQDLHELFGVSESGAKG-KADDEASKISC 161
+D I +K + Q+ E G ++ K +A+++SC
Sbjct: 164 IDAIKSLKRRHTAQNEKECSGNADGNYTSPKICGDANELSC 204
>Os09g0388800
Length = 245
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 2 FFMGYMRGRRHPMTFWPEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPLN 61
FF GY GR + WPEMLKL DWP S+ F++ LP HG ++I +LPF YT+ + G LN
Sbjct: 29 FFNGYYEGRMY-QNLWPEMLKLNDWPISNHFEELLPSHGVKYINSLPFQAYTNLKSGLLN 87
Query: 62 LAVRLPAGVLKPDLGPKTYIAYGCYEELGRGDSVTKLHCDMSDA 105
++ LP +LK D+GPK+YIAYG +ELGRGDSVTKLHCD+SDA
Sbjct: 88 VSTLLPDDILKLDMGPKSYIAYGYAQELGRGDSVTKLHCDLSDA 131
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 255 GALWDIFRREDSEKLQDYLRKHASEFRHIHCNPVKNVSHPIHDQTFYLTVEHKRKLKEEH 314
GALWDIFRRED KL+ YL KH+ +FRHI+C+ V+ V +P+HD+TF LT E KRKLKEEH
Sbjct: 148 GALWDIFRREDVPKLKLYLDKHSKKFRHIYCSAVQKVCNPVHDETFCLTKEQKRKLKEEH 207
Query: 315 G 315
G
Sbjct: 208 G 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,801,565
Number of extensions: 752859
Number of successful extensions: 1900
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1898
Number of HSP's successfully gapped: 8
Length of query: 454
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 350
Effective length of database: 11,605,545
Effective search space: 4061940750
Effective search space used: 4061940750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)