Os02g0109400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.
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Os02g0109400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.41 | 0.678 | 5.34 | -0.216 | 0.881 | 1.22 | -0.0629 | 2.22 | 0.164 | 3.09 | 20.2 | 3928 | -- | -- |
| 216.17 | 0.685 | 5.39 | -0.317 | 0.976 | 0.663 | 0.274 | -- | 0.186 | 2.94 | 21.24 | 3677 | -- | -- |
| 208.42 | 0.672 | 5.34 | -0.216 | 0.88 | 1.22 | -- | 2.22 | 0.164 | 3.08 | 20.19 | 3928 | -- | -- |
| 214.76 | 0.683 | 5.41 | -0.52 | 0.922 | 0.701 | -- | -- | 0.113 | 3.01 | 21.3 | 3888 | -- | -- |
| 252.35 | 0.74 | 5.34 | -0.226 | -- | 1.37 | -- | 2.36 | 0.158 | -- | 20.1 | 3928 | -- | -- |
| 226.76 | 0.706 | 5.38 | -0.0702 | 0.924 | -- | 0.0574 | -- | 0.305 | 2.96 | -- | -- | -- | -- |
| 226.77 | 0.705 | 5.38 | -0.0715 | 0.924 | -- | -- | -- | 0.304 | 2.97 | -- | -- | -- | -- |
| 254.5 | 0.743 | 5.47 | -0.156 | -- | 1.08 | -- | -- | 0.0362 | -- | 25 | 2586 | -- | -- |
| 217.23 | 0.686 | 5.43 | -- | 0.855 | 0.57 | -- | -- | 0.138 | 3.03 | 24.6 | 2651 | -- | -- |
| 275.86 | 0.776 | 5.38 | -0.0321 | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
| 226.91 | 0.705 | 5.38 | -- | 0.923 | -- | -- | -- | 0.312 | 2.97 | -- | -- | -- | -- |
| 254.54 | 0.743 | 5.42 | -- | -- | 0.828 | -- | -- | 0.123 | -- | 24.79 | 2582 | -- | -- |
| 275.89 | 0.775 | 5.38 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 3 | 205.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 5 | 205.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 11 | 205.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 27 | 205.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 66 | 206.38 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 77 | 206.57 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 122 | 207.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 126 | 207.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 142 | 207.50 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 145 | 207.54 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 146 | 207.55 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 151 | 207.58 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 155 | 207.60 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 158 | 207.61 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 167 | 207.66 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 179 | 207.72 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 184 | 207.75 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 185 | 207.78 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 215 | 208.04 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 239 | 208.27 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 20 |
| 246 | 208.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 248 | 208.34 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 281 | 208.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 296 | 208.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 300 | 208.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 329 | 208.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 379 | 209.07 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 20 |
| 390 | 209.13 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 403 | 209.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 422 | 209.21 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 14 |
| 438 | 209.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 448 | 209.25 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 16 |
| 475 | 209.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 491 | 209.37 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 500 | 209.40 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 506 | 209.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 510 | 209.43 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 1 |
| 686 | 209.82 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 699 | 209.84 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 758 | 209.95 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 776 | 209.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 780 | 209.98 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 20 |
| 795 | 210.01 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 7 |
| 801 | 210.02 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 11 |
| 813 | 210.03 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 22 |
| 815 | 210.03 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 826 | 210.05 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 854 | 210.10 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 872 | 210.12 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 881 | 210.13 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 884 | 210.14 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 18 |
| 930 | 210.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 964 | 210.27 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 989 | 210.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 997 | 210.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 13 |