Os07g0557500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0557500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.58 | 0.223 | 11 | 1.59 | 0.919 | -0.459 | -0.426 | 0.23 | 0.614 | 17 | 10 | 1433 | -- | -- |
| 22.65 | 0.222 | 11 | 1.56 | 0.929 | -0.458 | -0.45 | -- | 0.613 | 16.9 | 10 | 1447 | -- | -- |
| 23 | 0.223 | 11 | 1.59 | 0.917 | -0.457 | -- | 0.259 | 0.614 | 17.1 | 10.02 | 1428 | -- | -- |
| 23.15 | 0.224 | 11 | 1.57 | 0.923 | -0.441 | -- | -- | 0.612 | 17 | 10.01 | 1445 | -- | -- |
| 66.41 | 0.38 | 11 | 1.6 | -- | -0.441 | -- | 0.27 | 0.605 | -- | 21.12 | 1368 | -- | -- |
| 28.53 | 0.25 | 11 | 1.41 | 0.931 | -- | -0.373 | -- | 0.465 | 16.9 | -- | -- | -- | -- |
| 28.87 | 0.252 | 11 | 1.41 | 0.93 | -- | -- | -- | 0.463 | 17 | -- | -- | -- | -- |
| 66.35 | 0.379 | 11 | 1.5 | -- | -0.429 | -- | -- | 0.584 | -- | 21.08 | 1376 | -- | -- |
| 47.85 | 0.322 | 11.1 | -- | 0.897 | -0.924 | -- | -- | 0.0998 | 17 | 65.86 | 38633 | -- | -- |
| 74.37 | 0.403 | 11 | 1.37 | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
| 81.18 | 0.421 | 11.1 | -- | 0.905 | -- | -- | -- | 0.306 | 17 | -- | -- | -- | -- |
| 92.75 | 0.449 | 11.1 | -- | -- | -0.895 | -- | -- | 0.0775 | -- | 66.53 | 38759 | -- | -- |
| 124.24 | 0.52 | 11.1 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.24 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 4 | 22.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 5 | 22.30 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 6 | 22.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 18 | 22.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 21 | 22.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 22 | 22.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 25 | 22.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 35 | 22.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 37 | 22.49 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 47 | 22.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 49 | 22.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 51 | 22.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 57 | 22.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 59 | 22.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 64 | 22.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 77 | 22.56 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 84 | 22.57 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 103 | 22.58 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 107 | 22.58 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 125 | 22.59 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 231 | 22.61 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 234 | 22.61 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 247 | 22.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 248 | 22.62 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 358 | 22.67 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 371 | 22.68 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 411 | 22.71 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 414 | 22.71 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 490 | 22.75 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 556 | 22.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 571 | 22.78 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 581 | 22.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 647 | 22.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 651 | 22.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 667 | 22.82 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 668 | 22.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 700 | 22.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 791 | 22.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 835 | 22.88 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 858 | 22.89 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 948 | 22.91 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |