BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0557500 Os07g0557500|AK101830
(693 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0557500 Zinc finger, RING-type domain containing protein 845 0.0
Os02g0828900 Zinc finger, RING-type domain containing protein 122 6e-28
Os02g0109400 Transcription factor jumonji/aspartyl beta-hyd... 110 5e-24
>Os07g0557500 Zinc finger, RING-type domain containing protein
Length = 693
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/456 (91%), Positives = 416/456 (91%)
Query: 238 GTPAQPRRRKRAATSXXXXXXXXXXGTPAPPXXXXXXKAGDRGDSPPPLPDHLRCRRSDG 297
GTPAQPRRRKRAATS GTPAPP KAGDRGDSPPPLPDHLRCRRSDG
Sbjct: 238 GTPAQPRRRKRAATSDPPPEDDEEEGTPAPPRRRRRRKAGDRGDSPPPLPDHLRCRRSDG 297
Query: 298 KKWRCQNRALPTVSFCEYHYSRANKGKKPPADGEVLAVALXXXXXXXXXXXXXVNXXXXX 357
KKWRCQNRALPTVSFCEYHYSRANKGKKPPADGEVLAVAL VN
Sbjct: 298 KKWRCQNRALPTVSFCEYHYSRANKGKKPPADGEVLAVALQRQKKNKRKGRRNVNASPAS 357
Query: 358 XXXXXXDVTRDLPNGLMRISPGSSEPAASLPSPVTTKVGVDIPVPTQRCYRSKNAEPMPV 417
DVTRDLPNGLMRISPGSSEPAASLPSPVTTKVGVDIPVPTQRCYRSKNAEPMPV
Sbjct: 358 PPAATSDVTRDLPNGLMRISPGSSEPAASLPSPVTTKVGVDIPVPTQRCYRSKNAEPMPV 417
Query: 418 GPVKVVPRAMGMSKAGQKTCHRCGMKKAARIVQCKNCDNRYFCNSCINKWYSGLSKKDIK 477
GPVKVVPRAMGMSKAGQKTCHRCGMKKAARIVQCKNCDNRYFCNSCINKWYSGLSKKDIK
Sbjct: 418 GPVKVVPRAMGMSKAGQKTCHRCGMKKAARIVQCKNCDNRYFCNSCINKWYSGLSKKDIK 477
Query: 478 TRCPVCRGSCGCKQCTLGQTKGAISKESSGDQDKLISIKICNHQLYKLLPVELNQEQLDE 537
TRCPVCRGSCGCKQCTLGQTKGAISKESSGDQDKLISIKICNHQLYKLLPVELNQEQLDE
Sbjct: 478 TRCPVCRGSCGCKQCTLGQTKGAISKESSGDQDKLISIKICNHQLYKLLPVELNQEQLDE 537
Query: 538 LEIEAKIQETKISDVRVQVADEQSGSLDCNNCKLSVHRFLRSCPRCPFKLCLSCCQKIRD 597
LEIEAKIQETKISDVRVQVADEQSGSLDCNNCKLSVHRFLRSCPRCPFKLCLSCCQKIRD
Sbjct: 538 LEIEAKIQETKISDVRVQVADEQSGSLDCNNCKLSVHRFLRSCPRCPFKLCLSCCQKIRD 597
Query: 598 GNISAATPEDKFNQRLLQQESAHEDGSISCPSIELGGCGDSLLNLVYVPPSDQSEEVSSG 657
GNISAATPEDKFNQRLLQQESAHEDGSISCPSIELGGCGDSLLNLVYVPPSDQSEEVSSG
Sbjct: 598 GNISAATPEDKFNQRLLQQESAHEDGSISCPSIELGGCGDSLLNLVYVPPSDQSEEVSSG 657
Query: 658 DELDGPGNHSGVKDAVAESNGGPDRLSVGQQETVSS 693
DELDGPGNHSGVKDAVAESNGGPDRLSVGQQETVSS
Sbjct: 658 DELDGPGNHSGVKDAVAESNGGPDRLSVGQQETVSS 693
>Os02g0828900 Zinc finger, RING-type domain containing protein
Length = 995
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 22/175 (12%)
Query: 437 CHRCGMKKAARIVQCKNCDNRYFCNSCINKWYSGLSKKDIKTRCPVCRGSCGCKQCTLGQ 496
CH+C R+V CK C+N+ FC CIN+WY L + + +CP CR +C CK C +
Sbjct: 168 CHQCQRNDKGRVVWCKTCNNKRFCVPCINQWYPDLPENEFAAKCPYCRKNCNCKACLRMR 227
Query: 497 T-----KGAISKESSGDQDKLISIKICNHQLYKLLP--VELNQEQLDELEIEAKIQETKI 549
+ ISKE+ I+ H L L P +EL QEQ+ E E+EAKIQ +
Sbjct: 228 GVEEPPRKEISKEN--------QIRYACHVLRLLRPWLIELRQEQMAEKELEAKIQGVSV 279
Query: 550 SDVRVQVA----DEQSGSLDCNNCKLSVHRFLRSCPRCPFKLCLSCCQKIRDGNI 600
++V+ A DE+ + CN C S+ F RSC C + LCL+CCQ++R G I
Sbjct: 280 DQIKVEQAVCDLDER---VYCNRCSTSIVDFHRSCKHCFYDLCLTCCQELRKGEI 331
>Os02g0109400 Transcription factor jumonji/aspartyl beta-hydroxylase domain
containing protein
Length = 997
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 118/257 (45%), Gaps = 56/257 (21%)
Query: 437 CHRCGMKKAARIVQCKNCDNR----YFCNSCINKWYSGLSKKDIKTRCPVCRGSCGCKQC 492
CH+C K + R+V+C+N + +C CI +WY L++ D + CPVC +C CK C
Sbjct: 100 CHQCQRKDSGRVVRCRNGAEKNRRHRYCVKCIKRWYPHLTEDDFENCCPVCHNNCNCKTC 159
Query: 493 TLGQTKGAISKESSGDQDKL-ISIKICNHQLYKLLPV--ELNQEQLDELEIEAKIQETKI 549
KE + ++K+ S++I LLP +L+QEQ+ E +EA I+ +
Sbjct: 160 LRTNVINKGDKEFADGKNKIKYSLRIARF----LLPWLKQLHQEQMLEKSVEATIKGIDV 215
Query: 550 SDVRV-QVADEQSGSLDCNNCKLSVHRFLRSCPRCPFKLCLSCCQKIRDG---------N 599
+D+ V Q + C+NC+ S+ F RSC + LCLSCCQ++R G +
Sbjct: 216 TDLEVPQAQFNNDERIYCDNCRTSIVDFHRSCKSGHYDLCLSCCQELRQGLTTGTVVTCD 275
Query: 600 ISAATPE----------------------DKFNQRLLQQESAHED------------GSI 625
+ PE D+ N RL+ + ED GSI
Sbjct: 276 TAVDVPEIEGKEGLQEGSSHSSAVGQGASDQQNDRLIGSAAPSEDCTPSLIWRAKSNGSI 335
Query: 626 SCPSIELGGCGDSLLNL 642
CP GGCGD LL L
Sbjct: 336 PCPP-NAGGCGDCLLEL 351
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,078,224
Number of extensions: 727481
Number of successful extensions: 1676
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 3
Length of query: 693
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 585
Effective length of database: 11,396,689
Effective search space: 6667063065
Effective search space used: 6667063065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)